Bacteroides xylanisolvens: BXY_46120
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Entry
BXY_46120 CDS
T02579
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bxy
Bacteroides xylanisolvens
Pathway
bxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXY_46120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bxy03021
]
BXY_46120
03019 Messenger RNA biogenesis [BR:
bxy03019
]
BXY_46120
Transcription machinery [BR:
bxy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BXY_46120
Messenger RNA biogenesis [BR:
bxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BXY_46120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
CBK69476
UniProt:
D6D582
LinkDB
All DBs
Position
5617650..5619908
Genome browser
AA seq
752 aa
AA seq
DB search
MYNIIQLNDKNLSELQVIAKELGIKKADSYKKEDLVYKILDEQAIVGATKKVAADKLKEE
RKNEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPV
VEAKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAA
PAQQPTAEKKAKSKPAAETNKPAAEPNKPVAEKKVIDKPQKKAAPVIDEESNILSSVDDD
DFIPIEDLPSEKIELPTELFGKFEATKTEPVQTAPEQPSHPQQQQQSQQQQAQQQRPRIV
RPRDNNNGNNNVNNNSNNANNNNNNFQRNNNNQNQVQNQNQQRLPMPRATQQNHANENLP
AQQQQQQERKVIEREKPYEFDDILNGVGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQ
IKLFGLKTGDVVEGVIRPPKEGEKYFPLVKVSKINGRDAAFVRDRVPFEHLTPLFPDEKF
KLCKGGYSDSMSARVVDLFAPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEVYMIM
LLIDERPEEVTDMARSVNAEVIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDS
ITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSK
MDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNITASSTRRDDLLLDKTTLDRMWILRKY
LADMNPIEAMDFVKDRLEKTRDNDEFLMSMNS
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatccaattaaacgacaaaaatctgtcggaacttcaagttattgccaaa
gagttaggcataaaaaaagcagactcatacaaaaaagaagaccttgtttataagatactc
gatgaacaggctattgtaggagctactaagaaagttgccgcagataagctcaaagaagaa
cgcaaaaatgaagaacaaaagaaaaagcgttcacgggtagctcctaccaaaaaagaagac
aaggtagtttccacaccaaagagtggagaggttaataaaacaaaagaagccactcctgta
aaagcaccacaaccttccaagaaagaagaaagtacaaacaaagaaaaagaagctcctgtt
gtagaagctaaagcagaaaacgctactactgctcccaagcgtaaagtgggacgtccacgc
aagagcgctgacgcagaagagaaaaaagaagtagaaaatgtaacaccggctgctcccaaa
gtggtggaaactaagcctgttgttgcagagaaaactactgaaacaaaagaaaaagctgct
ccagcacaacagccgactgctgaaaagaaagcaaaaagcaaaccggctgcagaaacaaat
aaaccagccgcagagccaaacaagcctgttgcagagaaaaaagttatagataaaccacaa
aagaaagccgcacccgttatcgacgaggaaagcaatatcttatccagcgttgacgatgat
gattttattccaatcgaagatctgccttctgaaaaaatagagcttcctaccgaactcttt
ggcaaattcgaggcaactaaaacagaacctgtgcaaacagcacctgaacagccatctcat
cctcaacagcaacaacaatctcaacagcagcaagcacagcagcaacgcccgcgtattgtc
cgtccacgcgacaataacaacggtaacaacaatgtgaacaataatagcaataacgctaat
aacaacaataataatttccagcgtaataacaataatcaaaatcaggttcagaatcagaac
caacaacgcttaccgatgccacgtgccactcagcaaaaccatgcgaacgagaatcttccg
gcacaacagcaacaacagcaggagcgcaaggttattgaacgcgaaaagccttacgaattc
gatgatattctcaacggagtaggcgttctggaaatcatgcaggatggatacggattcctc
cgttcttccgattacaactacctttcttctccggacgacatttatgtatcacaatctcaa
atcaaactctttggtttgaaaaccggtgatgtagtggaaggtgttatccgtccacccaaa
gaaggagaaaaatatttcccgttggtaaaagtgtcgaaaattaacggacgtgacgcagct
ttcgttcgcgaccgtgttcctttcgaacatctgacacctcttttcccggatgaaaagttc
aaactttgcaaaggcggttattcagactccatgtctgcacgcgttgttgaccttttcgct
cctatcggtaaaggacaacgtgccttgatcgttgcccagccaaagacaggtaagactatc
ttaatgaaagatatcgctaacgctattgcagccaatcacccggaagtttacatgattatg
ctgctgattgacgaacgtccggaagaagtaaccgatatggcacgcagcgttaatgcagaa
gttatcgcttctactttcgacgaaccggcagaacgtcacgtaaaaattgcaggtattgta
ttggaaaaggcaaaacgtttggtagaatgtggtcacgacgtagtgatcttccttgattct
atcacccgtctggctcgtgcatacaatacagtatctcctgcatccggtaaagttctttcc
ggtggtgtggatgcaaatgcacttcacaaacctaaacgtttcttcggtgctgcccgtaat
attgaaaacggcggctcgttgaccatcatcgctaccgcattgatcgataccggttctaaa
atggacgaagttatcttcgaagaatttaagggtaccggcaacatggagttgcagctcgac
cgcaacctgtccaacaaacgtatcttcccggcagtcaacattactgcatccagcactcgt
cgcgacgacctgttgcttgataagacaactcttgaccgcatgtggatattacgtaaatat
cttgcagacatgaatccgatcgaagcaatggacttcgttaaagaccgtttggaaaagacc
agagataacgatgaattcctgatgagcatgaacagctaa
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