Burkholderia sp. YI23: BYI23_A004170
Help
Entry
BYI23_A004170 CDS
T01711
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BYI23_A004170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
byi03019
]
BYI23_A004170
Enzymes [BR:
byi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BYI23_A004170
Messenger RNA biogenesis [BR:
byi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BYI23_A004170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AET88255
LinkDB
All DBs
Position
1:complement(472508..474094)
Genome browser
AA seq
528 aa
AA seq
DB search
MSFDSLGLSEPLLRAVNELGYSTPTPIQLQAIPAVLKGGDLLAGAQTGTGKTAGFTLPIL
QRLSQLGPVSAPAASGAKRPVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGI
NPQIDALRRGVDIVVATPGRLLDHMQQKTIDVSQLEILVLDEADRMLDMGFIHDIKRVLA
KLPAKRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVEQKIHPVDRDRKREL
LTHLIRGNNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKAET
LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEHQ
LLRDIERLIKRPIPQEVIAGFEPDPSAKPEPIQRRSQGRGQGQGQGRQGQRNGEGRANGE
ARSGGESRRSGEPRRDGGRPNGEARGARPSNGGNAGKSANGGKPGAQPSRDREARNPNKP
NANANPAPRRAESQQAGHAANPRKPAANPGALLSGGRRDGLRSGDRSR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcgctcggcttgtccgaacctttgcttcgcgccgtcaacgaactcggc
tattccactcccactccgatccagcttcaggcgattcccgccgtcctgaaaggcggcgac
ctgctcgcgggcgcgcagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgtcgcagcttgggcctgtctcggccccggccgcgagcggcgcgaaacgtccg
gtgcgcgcgctgatcctcacgccgacgcgcgaactcgccgcgcaggtcgaagaaagcgtg
cgcgcgtatggcaagtatctgaaactcaagtcgacggtgatgttcggcggcgtcggcatc
aatccgcagatcgatgcgctgcgccgcggcgtcgatatcgtcgtcgcaacgccgggacgt
ctgctcgatcacatgcagcaaaagacgatcgacgtttcgcagctcgaaattctcgtgctc
gacgaagccgatcgcatgctcgacatgggtttcatccacgacatcaagcgcgtgctcgcg
aagctgccggccaagcgccagaacctgctgttctcggccacgttctccgatgaaatcaag
gcgctcgccgacagcctgctcgattcgcccgcgctgatcgaagtggcgcgccgcaatacg
accgccgagacggtcgagcagaagatccatccggtcgatcgcgaccgcaagcgcgaactg
ctcacgcatcttatccgcggcaacaactggttccaggtgctcgttttcacgcgcacgaag
cacggcgcgaaccgtctcgccgagcaattgacgaaggacggcatcagcgccctcgcgatt
cacggcaacaagagccagtcggcccgcacgcgtgcgctcgccgaattcaaggccgagacg
ctgcaggtgctggtcgcgacggacatcgccgcgcgcggtatcgacatcgatcaactgccg
cacgtcgtcaacttcgatctgccgaacgtgccggaagactatgtgcatcgcatcggccgc
acggggcgcgcgggtgcagaaggcgaagcagtctcgctcgtgtgcgtggacgagcatcaa
ttgctgcgggatatcgagcgcctgatcaagcggccgattccgcaagaagtcattgccgga
ttcgagcccgatccgagcgcgaagccggagccgatccagcgccgcagccagggacgcggt
cagggtcaaggccaagggcgtcagggtcagcgcaatggcgagggacgtgcgaatggcgaa
gcgcgttcgggcggcgaatcgcgtcgcagcggcgagccgcgtcgcgacggcggccggccg
aacggcgaagcgcgcggcgcgcggccttcgaatggcggcaatgcgggcaagagcgcgaat
ggcggcaagcccggcgctcagccttcgcgcgaccgcgaagcgcgcaacccgaacaagccg
aacgcgaacgcaaacccggcgccgcgacgcgcggaatcgcagcaagcgggccatgccgcg
aatccgcgcaagccggcggccaatccgggcgcgctgcttagcggcggacggcgcgacggc
ctgcgttcgggcgatcgcagccgttaa
DBGET
integrated database retrieval system
