Burkholderia sp. YI23: BYI23_A008550
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Entry
BYI23_A008550 CDS
T01711
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BYI23_A008550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_A008550
Enzymes [BR:
byi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BYI23_A008550
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BYI23_A008550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DUF374
Motif
Other DBs
NCBI-ProteinID:
AET88693
LinkDB
All DBs
Position
1:963369..967061
Genome browser
AA seq
1230 aa
AA seq
DB search
MTILDNNEVRELDVFSCALDGVNQIEASAGTGKTWNICALYVRLLLEKRLSVEQILVVTF
TKAATAELHERIRSRLAGVAHAIENGDAAGDPFIEQLFDTALADLDADEAAKRLRIAVST
FDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDSALRFELAADFWRERVEPVAARTP
SFASWLVAKGAGPASLDAQLARRLKKPLAALRFGDTGAAEAADMQALFDEACALWNAERD
SIVKLLADAQGALKGNSYSAKIVGEAIDAWTAYFSEGDCHAPPPERALKLTATALAKGTK
AKNTPPVHAFFDQAEALAASAAAAEASQRAMWLDIVREWLAYAPGELAARKRARRVVSFD
DLLSNLHHALVKHAWLAEALRARYPAALIDEFQDTDPLQYAIFSRVFAPHGPLFLVGDPK
QAIYSFRAADLHTYLAARDGASARYTLAVNQRSTPPIIEACNRVFEANAKAFILDGLDYQ
PVRAGTRKRGPFVDETPAAAYADIADFCVWMLPHGESALAKTHAQRDAAEACAAEIARLL
RGAARGEVRIGDKALSAGDIAVLVQTHRQGSLVKRVLASWGIGSVELAQASVFGSPDAEQ
IERVLAAIDTPGDLRRLRAALATDWFGLDAAALWRLEHADAADPHGEPIDSTSWVERFSR
YRTIWHERGFAVMWRTLARELSIATRLVARPDGERRLTNVNHLAELLQARSAEQPGIAPT
LRWLAAQRERQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGSAREPSAS
GLPDAREYHDDAGVAVLHYGIEGDEDNHVSGTIAREQAAERARLVYVALTRAVFRCYVVA
GFYLSNRSTKESRRSVLNWLVAGNGREFDAFSKAPPEDAEIAAAWHALAAKCDGAIGVAP
LPVIEMREPLVADTSKQHEIAARTNRRILRDTWRMASFSSLIAAGARDEANQAQPAEARP
DHDALAALKDDARAQASAKKDAPLAEDDILAFPRGAAAGECLHRMYELADFTEPSKWTEA
VERALHEHPTPAPEALAPQLRPMMLRLLADTVAAEIAPGMRLHDIAMTRRMNELEFLFPA
EALDFTALRRVLAAHGFPDVALESGALRGFIKGFIDMIVEHEGRYWIIDWKSNHLGDDAA
DYAAAPLGVAMAEHAYHLQALVYVVALHRYLRARLPGYAYDTHIGGYLYLFVRGVRPDWR
DGDAASGVHRGRPSLELVEALDRLMAGGAA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcttggataacaacgaagtgcgcgaactcgacgtcttctcatgcgcgctcgat
ggcgtgaaccagatcgaggcctccgccggcacgggcaagacgtggaacatctgcgcgctc
tacgtgcgcctgctgctcgaaaagcggctgtccgtcgagcagattctcgtcgtgacattc
acgaaggccgcgaccgccgagttgcacgagcgcatccgctcgcggctcgcgggcgtcgcg
catgcaatcgaaaacggcgacgccgccggcgatccgttcatcgagcagcttttcgatacg
gcgctcgcggacctcgatgccgatgaagccgcgaagcgcctgcgcattgcggtatccacg
ttcgatcaggccgcgatccacacgattcacgcgttctgccagcgcgcgctgcaggaagcg
ccgttcgccgcggcgatgcccttcgccttcgagatggaagccgacgacagcgcgctgcgc
ttcgaactggcggcggacttctggcgcgagcgcgtcgagccggtcgcggcacgcacgccg
tcgtttgcgtcgtggctcgtcgcgaaaggcgcgggacccgcatcgctcgatgcgcaactc
gcgcggcggctgaagaagccgcttgcggcgctgcgcttcggcgacaccggcgcggcggaa
gccgccgacatgcaggccctgttcgacgaggcttgcgcgctgtggaacgccgagcgcgac
agcatcgtgaaactgctcgccgacgcgcagggcgcgctcaagggcaacagctacagcgcg
aagatcgtgggcgaggccatcgacgcgtggaccgcctatttctccgaaggcgattgccac
gcgccgccgcccgaacgcgcgctcaagctcacggccaccgcgctcgccaaaggcacgaag
gcgaagaacacaccgcctgtgcacgccttcttcgaccaggccgaggcgctcgccgcgtcc
gccgccgccgccgaggcgtcgcagcgtgcgatgtggctcgacatcgtgcgcgaatggctc
gcttacgcgcccggcgaactcgccgcgcgaaagcgcgcgcgccgcgtcgtgtcgttcgac
gatctgctgtcgaacctgcatcacgcgctcgtcaagcatgcgtggctcgccgaggccttg
cgcgcgcgttatccggccgcgctcatcgacgaattccaggacacggacccgctgcaatac
gcgatcttcagccgcgtgttcgcgccgcatgggccgctttttctcgtcggcgatccgaag
caggcgatctacagtttccgcgccgccgacctgcacacgtatctcgccgcgcgcgacggc
gcgagcgcgcgctatacgctcgcggtcaaccagcgttcgacgccgccgatcatcgaggcg
tgcaaccgcgtgttcgaagcgaatgcgaaagcgttcatcctcgacgggctggactatcag
ccggtgcgcgcgggcacgaggaagcgcggaccgttcgtcgatgagacgcccgccgcggcg
tacgccgacatcgccgatttttgcgtgtggatgctgccgcacggcgaatcggcgcttgca
aaaacccatgcgcagcgcgatgccgccgaagcttgcgccgccgagatcgcgcggcttctg
cgcggggcggcgcgcggcgaagtgagaatcggcgacaaggcgctgtcggcgggcgatatc
gccgtgctcgtgcagacgcatcggcagggcagtctggtgaagcgcgtgctcgcgtcgtgg
ggcatcggcagtgtcgagctcgcgcaggcctcggtgttcggctcgcccgacgccgagcag
atcgagcgcgtgctcgccgccatcgatacgcccggcgacctgcgccgcctgcgcgcggcg
ctcgcaaccgactggttcgggctcgacgccgccgcgctctggcgtctcgaacacgccgac
gccgccgatccgcacggcgagccgatcgattcgacgagctgggtcgagcgcttctcgcgg
tatcgcacgatctggcacgagcgcggttttgccgtgatgtggcgcacgctcgcgcgcgaa
ttgtcgatcgcgacgcgtctcgtcgcgcggcccgacggcgagcgtcggctcaccaatgtc
aatcatctcgcggagctgttgcaggcgagatcggccgagcagcccggcatcgcgccgacg
ctgcgctggctcgccgcgcaacgcgagcggcaaggcggcggcgaggaagcgcaactgcgt
ctcgaatcggaccgcaatctcgtgcagatcgtgaccgtgcacaagtcgaaagggctggag
tatgcggtcgtgttctgtccgttcctgaacgacggcagcgcgcgcgagccgtccgcttcg
ggcctgccggatgcgcgcgagtatcacgacgatgcgggtgtcgccgtgctgcattacggc
atcgaaggcgatgaggacaatcacgtgagcgggacgatcgcgcgggagcaggccgccgag
cgggcgcgcctcgtgtatgtcgcgctgacgcgggcggtgttccgctgttatgtcgtcgcg
ggcttttatctttcgaaccgctcgacgaaggagtcgcgccgcagcgtgctcaactggctc
gtcgcgggcaacggccgcgagttcgacgcgttcagcaaggcgccgcccgaggacgcggag
atcgccgcggcgtggcacgcgctcgcggcgaaatgcgatggcgcgatcggcgtcgcgccg
ctgccggtcatcgagatgcgcgagccgctcgtcgccgatacatcgaagcagcacgagatc
gccgcgcgtacgaaccggcgcatcttgcgcgacacatggcgcatggcgagcttcagttcg
ctgatcgccgccggcgcgcgcgacgaagcgaatcaggcgcagccggccgaagcgcggccc
gatcacgacgcactcgccgcgctcaaggacgatgcgcgcgcgcaagcgtcggcgaagaag
gatgcgccgctcgccgaagacgacatcctcgcgtttccgcgcggcgcggcggcgggagaa
tgcctgcatcgcatgtacgagcttgccgatttcacggagccatcgaagtggacggaagcc
gtcgagcgcgcgctgcacgaacatccgacgcccgcgccggaagcgctcgcgccgcagctt
cgtccgatgatgctgcgcctgcttgccgataccgtcgccgccgaaatcgcgccgggcatg
cggctgcacgacatcgccatgacgcgccgcatgaacgaactggagtttctgtttccggcc
gaggcgctcgatttcaccgcgttgcggcgcgtgctcgcggcgcacggctttcccgacgtc
gcgctggagtccggcgcgctgcgcggattcatcaagggattcatcgacatgatcgtcgag
cacgagggccgttactggatcatcgactggaagtcgaatcatctcggcgacgacgccgcc
gattacgccgccgcgccgctcggcgttgcgatggcggaacatgcgtatcaccttcaggcg
ctcgtgtacgtggtcgcgctgcatcgctatttgcgcgcgcgcttgcccggctacgcgtac
gacacgcatatcggcggctatctgtatctgttcgtgcgcggcgtgcgtcccgactggcgc
gacggcgatgcggcgagcggcgtgcatcgcgggcggccgtcgctggaactggtcgaagcg
ctcgaccggctgatggcgggaggcgcggcatga
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