Burkholderia sp. YI23: BYI23_A011980
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Entry
BYI23_A011980 CDS
T01711
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BYI23_A011980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_A011980
Enzymes [BR:
byi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BYI23_A011980
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BYI23_A011980
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AET89036
LinkDB
All DBs
Position
1:complement(1341997..1345482)
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AA seq
1161 aa
AA seq
DB search
MSTKASTQAVNAQSSAPIALVKAGQRFVFDGASGSSDALAIARYHTAYRERVPLLTVVTA
GAVDAQRLAAEIPYFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDIL
IVPATTALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRG
SLIDLYPMGSALPYRLDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTA
FRSRWREVFEGDPSRSQIYKDMGNGVPSAGIEYYLPLFFDETATLFHYLPEGSQLVFVGD
MDAAIKRFTHDTKQRFDFLSHDRERPLLEPRRLFLTDDDFFTFAKPFAQLKFPATPEGGW
AVPLPGLAIDRHADEPLLALRHYLEQTDNRVMLVAESAGRRETIQQLLADNHLRGESRDT
FLEWLTADAKFTLGIAPLANGFVLPSEKLAIVTETELYGPLARRAGRRRQEQASNVDSMV
RDLAELKIGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYQNDAKLYVPVAQLHVISR
YSGADPDSAPLHQLGSGQWEKAKRKAAQQIRDTAAELLNLYARRASREGYAFKLEPRDYT
KFAESFGFEETPDQAAAIASVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMAGKQ
VAILSPTTLLAEQHTQTFTDRFADWPVRIAELSRFKTGKEVSTAIQQINEGSIDIVIGTH
KLLSSDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR
DFSVIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRTMLEA
LVPEARIAVAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTILMHRADKF
GLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLE
IRGTGEVLGDKQSGEIQEIGFQLYTDMLNDAVRALKEGREPDLNAPLAATTEINLHAPAI
LPADYCGDVQERLSLYKRLANCESSDAIDGILEELVDRFGKLPPQAHALVETHRLRLAAK
PLGISKIDAAELSISLQFIPNPPVDGMKIIEMVQKHKHIKLAGQDKLRIEARSPDLAVRI
STVKETLRALGGPVRQALAAR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaagcgtccacccaagccgtcaacgcgcagtccagcgctcccatcgcgctc
gtgaaggcgggtcagcgcttcgtcttcgacggcgcgtccggctcctccgatgcgctcgcc
atcgcgcgctatcacaccgcgtatcgcgagcgcgtgccgctcctgacggtcgtcaccgcg
ggcgccgtcgatgcgcagcgtctcgccgccgagatcccctacttcgcgccggatgcgcgc
gtgcgtcttctgcccgactgggaaacgctgccttacgacaccttttcgccgcaccaggat
ctcgtctccgagcgtctcgcgacgctgcacgatctcggcgaaggacgctgcgacattctt
atcgtgcccgcgacgacggcgctgtaccgcatgccgccggcctcgtttctcgcggcctac
acgttttcgttcacgcaaggcgagcgcctcgacgaagcgaagctcaaggcgcaactgacg
ctcgcgggctacgagcacgtgagccaagtcgtgcgcccgggcgagtattgcgtgcgcggc
tcgctgatcgatctttatccgatgggctcggcgctgccttatcgcctcgatctgttcgac
gatcaggtggactcgatccgcgcgttcgatcccgacacgcagcgcagcctctacccggtg
cgcgacgtgcgcctgttgccgggccgcgagtttccgttcgacgaagccgcgcgcaccgca
ttccgcagccgctggcgcgaagtcttcgagggcgacccgagccgctcgcagatttacaag
gacatgggcaacggcgtgccgtcggcgggcatcgaatattatctgccgctgtttttcgac
gaaaccgcgacgctctttcactacctgccggaaggctcccagcttgtgttcgtcggcgac
atggacgcggcgatcaagcgcttcacgcacgacacgaagcagcggttcgacttcctttcg
cacgaccgcgagcgcccgctgctcgaaccgcgccggctctttctgaccgacgacgacttc
ttcaccttcgcaaagcccttcgcgcagctcaaattccctgcgacgcccgagggcggctgg
gcggtgccgctgccgggcctcgcgatcgaccgtcacgccgacgagccgctgctcgcactg
cgccattatctggagcagacggacaaccgcgtgatgctcgtcgccgaatcggcgggacgg
cgcgaaacgattcagcaattgctcgcggacaaccacctgcgcggcgagtcgcgcgacacc
ttcctcgaatggctcaccgccgacgcgaagttcacgctcggcatcgcgccgcttgcaaac
ggcttcgtgttgccctccgagaaactcgcgatcgtcaccgaaaccgagctatacggcccg
ctcgcgcgtcgagccggccggcggcggcaggaacaggcgagcaatgtcgattcgatggtg
cgcgatctcgccgaactgaagatcggcgatccggtcgtgcatgcgcaacatggcatcggc
cggtacatgggtctcgtgtcgatggacctcggcgaaggcgaaaccgagttcctgcacctc
gaatatcagaacgacgcgaagctgtacgtgccggtcgcgcagttgcacgtgatctcgcgc
tatagcggcgcggacccggacagcgcgccgttgcatcagctcggttccggccagtgggaa
aaggcgaagcgcaaggccgcgcagcaaatccgcgataccgcggccgaactgctgaatctg
tatgcgcgccgcgcatcgcgcgaaggctacgcgttcaagctcgaaccgcgcgattacacg
aagttcgcggagagcttcggcttcgaggagacgcccgatcaggcggcggcgatcgcatcg
gtcatcggcgacatgacgagcggcaaaccgatggaccggctcgtgtgcggcgatgtcggc
ttcggcaagacggaagtcgcgttgcgcgccgcgttcatcgcggtgatggcgggcaagcag
gtcgcgattctttcgcctacgacgctgctcgccgagcagcacacgcagaccttcaccgac
cgtttcgccgactggcccgtgcgcattgcggagctgtcgcgtttcaagaccggcaaggaa
gtctcgacggcgatacagcagatcaacgaaggcagcatcgatatcgtgatcggcacgcac
aagctcttgtcgagcgatgtgaagttcaagcggctcgggctcgtgatcatcgacgaggag
catcgctttggcgtgcgacagaaggaggcgctcaaggcgttgcgcgcggaagtcgacgtg
ctcacgctcaccgcgacgccgattccgcgcacgctcggcatggcgctcgaaggcctgcgc
gatttctccgtgatcgcgaccgcgccgcagaagcggctggcgatcaagaccttcgtgcgc
cgcgaggaagacggcgtgatccgcgaggccatgctgcgcgagctgaagcgcggcggccag
gtgtacttcctgcacaacgaagtcgagacgatcgaaaaccgccgcacgatgctggaggcc
ctcgtgcccgaggcgcgcatcgcggtggcacacgggcagatgcacgagcgcgagcttgag
cgcgtgatgcgcgatttcgttgggcagcgtgcgaacgtgctgctgtgcacgaccatcatc
gagaccggcatcgacgtgccgagcgcgaacaccatcctcatgcatcgcgcggacaagttc
ggtcttgcgcagctgcatcagttgcgtgggcgcgtggggcgctcgcatcaccaggcgtat
gcgtacttgctcgtgcacgatccgcagtcgctgacgaagcaggcgcagcgccgcctcgaa
gcgattcagcagatggaggaactcggttcgggcttctatctggcgatgcacgacctcgag
attcgcggcaccggcgaggtgttgggcgacaagcaatcgggcgagattcaggagatcggt
ttccagctttacaccgacatgctgaacgatgccgtgcgcgctttgaaggaaggacgcgag
ccggatctgaacgcgccgctcgcggcgacgaccgagatcaacctgcatgcgccggcgatt
ttgcccgccgattactgcggcgatgtgcaggagcgtttgtcgctgtacaagcggctggcg
aactgcgagtcgagcgatgcgatcgacggtattctcgaagagctcgtcgaccggttcggc
aagttgccgccgcaggcgcatgctttggtcgagacgcatcggttgaggctggcggcgaag
ccgctgggcatttccaagatcgatgcggcggagttgtcgatatcgttgcagttcattccg
aatcctccggtggatgggatgaagatcatcgagatggtgcagaagcataagcacatcaag
ttggcggggcaggataagttgcggatcgaagcgcggagtccggatttggcggtgaggatt
tctactgtcaaggagacgctgcgggcgctgggggggccggttaggcaggcgcttgccgcg
cggtga
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