Burkholderia sp. YI23: BYI23_A018120
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Entry
BYI23_A018120 CDS
T01711
Symbol
uvrD
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03420
Nucleotide excision repair
byi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BYI23_A018120 (uvrD)
03430 Mismatch repair
BYI23_A018120 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_A018120 (uvrD)
Enzymes [BR:
byi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BYI23_A018120 (uvrD)
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BYI23_A018120 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
BYI23_A018120 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_11
DUF8203
Motif
Other DBs
NCBI-ProteinID:
AET89650
LinkDB
All DBs
Position
1:complement(2039135..2041501)
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AA seq
788 aa
AA seq
DB search
MPDLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTF
TNKAAREMMARLSALLPIDTRGMWIGTFHGLCNRMLRAHYRDAGLPQTFQILDTSDQLSA
IKRLMKGLNVDDEKYPAKNLQYFINNAKEQGLRPKDVDATDAFNRKFVELYEAYDQQCQR
EGVVDFPELLLRCHELLAHNPPLRAHYQARFRNILVDEFQDTNKLQYAWLKLLAGEHNAI
FAVGDDDQSIYAFRGANVGNMRDFENEFRVRNLIKLEQNYRSHGHILDTANYLIANNARR
LGKNLRTDAGHGEPVRVYEAATDSQEAGWIVEEIKALINTGIARGEVAVLYRSNAQSRTI
EHTLVNAGIPYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSI
EQVADAARLYNCSMAAAVPYVTGKAGSSLGAFATLIAKMRAETQQMSLPETVEYVVRASG
LAAFYETEREGQDRLENLQELVNAAAAFVSEEGYGLDTPARSIPLRPGATAAPEIVSEDG
EIEVLDAPTITDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFT
AVFITGLEEGLFPHENSAQESDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRYNI
RSRFFDELPEGSLKWLTPKMEAGARWGGRSDNAGWGRDWFARPGQERGGAAGYARDQGAS
AALPSFANEQRAADAGFKVGQAVFHTKFGEGTVTALEGSGGDARAQVRFKRHGEKWLALS
VAKLQAVE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgctcgcgaatctgaaccccgaacaactcgccgccgtgacgctgccgaac
gagcccgcgctcattctcgcgggcgccggcagcggcaagacgcgcgtgctcattacgcgc
atcgcgtggctgatccagcagggctacgcgtcgccgccgaccgtgctcgccgtgaccttc
acgaacaaggccgcgcgcgagatgatggcgcgcttgtccgctttgctgcccatcgatacg
cgcggcatgtggatcggcaccttccacggcctgtgcaaccgcatgctgcgcgcgcattac
cgcgacgccggcctgccgcagactttccagattctcgacacgtcggaccagctttcggcc
atcaagcggctgatgaagggcctgaacgtcgacgacgaaaagtatccggcgaagaacctc
cagtacttcatcaacaacgcgaaggagcagggcctgcgtccgaaagacgtcgacgccacc
gacgcgttcaatcgcaagttcgtcgagctttacgaagcctacgaccagcaatgccagcgc
gaaggcgtggtggattttccggaactgctgttgcgctgtcatgaactgctcgcgcacaat
ccgccgctgcgcgcgcattaccaggcgcgtttccgcaatattctcgtcgacgagtttcag
gacacgaacaagctgcaatacgcgtggctgaaactgctcgcgggcgagcacaacgcgatc
ttcgccgtgggcgacgacgaccagtccatttacgcgttccgcggcgcgaacgtcggcaac
atgcgcgatttcgagaacgaattccgcgtgcgcaatctcatcaagctggagcagaactac
cgctcgcacggccatattctcgacacggcgaactatctgatcgcgaacaacgctcggcgg
ctcggcaagaatctgcgcaccgacgcgggccacggcgagccggtgcgtgtctacgaggcc
gcgacggattcgcaggaagcgggctggatcgtcgaagaaatcaaggcgctcatcaacacg
ggcatcgcgcgcggcgaggtcgcggtgctgtaccggagcaacgcgcagtcgcgcacgatc
gaacatacgctcgtgaacgcgggcattccgtatcgcgtctatggcggcttgcgctttttc
gagcgtcaggaagtgaagcacgcgctcgcgtatctgcgtctcatcgacaatccgaatgat
gacaccgcgttcgcgcgcgtcgtcaattttccgacgcggggcatcggcgcgcgttccatc
gagcaggtggcggacgccgcgcgtctctataactgttcgatggccgccgccgtgccgtat
gtcacgggcaaggcgggatcgagcctcggcgcgttcgcgacgctcatcgcgaaaatgcgc
gccgagacgcagcagatgagcctgcccgaaacggtcgaatacgtcgtgcgcgcgagcggt
ctcgccgcgttctacgaaaccgagcgcgaagggcaggaccggctggagaacttgcaggaa
ctcgtgaacgcggcggcggcgttcgtcagcgaagaaggctatgggctcgacacgcccgcg
cgctcgattccgctgcgccccggcgctacggctgcgcccgagatcgtcagcgaggacggc
gagatcgaagtgctcgatgcgccgaccatcaccgatcccgcgcaaaaccccgacaccatg
acgccgctcgccggcttcctgtcgcacgcctcgctcgaagccggcgacaaccaggcgcaa
gccggccaggacgccgtgcaactgatgaccgtgcacgcggcgaagggcctcgaattcacg
gcggtgttcatcaccggtctcgaagaagggctgttcccgcacgagaacagcgcgcaggaa
tcggacgggctggaggaagaacgccgtctcatgtacgtggcgatcacgcgcgcgaaggag
cggctttatctgtcgttcgcgcaaagccgcatgctgcatgggcagacgcgctacaacatc
cgttcgcgctttttcgacgaactgcccgaaggctcgctcaaatggctcacgccgaagatg
gaagcgggcgcgcgctggggcggacgttcggacaacgccggctggggccgcgactggttc
gcgcgtccgggacaggaacgcggcggcgccgcaggctatgcgcgcgatcagggcgcgagc
gcggcgttgccgtcgttcgccaacgagcagcgcgccgccgatgcgggcttcaaggtcggt
caagcggtatttcacacgaagttcggcgaaggcaccgtgaccgcgctcgaaggctccggc
ggcgatgcgcgtgcccaagtgcgcttcaagcgccacggtgagaaatggctcgcgctctcg
gtcgcgaaactgcaggccgtcgaatga
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