Burkholderia sp. YI23: BYI23_B002240
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Entry
BYI23_B002240 CDS
T01711
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BYI23_B002240 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
byi03019
]
BYI23_B002240 (recQ)
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_B002240 (recQ)
Enzymes [BR:
byi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BYI23_B002240 (recQ)
Messenger RNA biogenesis [BR:
byi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BYI23_B002240 (recQ)
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BYI23_B002240 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AET90831
LinkDB
All DBs
Position
2:280953..282749
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AA seq
598 aa
AA seq
DB search
MNDTHALHARSRKPRDHDLETALRKVFGFPHLRPGQEDVIRSVLDGNDTLAVMPTGAGKS
LCYQLPALQFDGMTIIVSPLISLMRDQATKLTEAGIATAVLNSALSASEAREAMQALARH
EIRMLFVTPERLVDADFSAELTAKDMPPIALAVIDEAHCISQWGHDFRPAYVELIHAIKM
LGRPPVLALTATATPAVIVDIVRELQMRHPHVIHTGVYRDNLHFNVEQLTNPEDRRKRAI
ELATQEAGSGIVYCATVAECEALHAALVDAGVSAERYHGKLASGARSDAQDAFMADRARV
MVATNAFGMGIDKPDIRFVIHAQMPGSLDAYYQEAGRAGRDGEPARCTLLFDMKDRQVQQ
FFMSGRYPSAETIARVAEKVRELAMEDSGRTLAQPLARLREALPNVGANKLRVAATLLND
IGITRRTRRGGMKLVGDGAPLAKLDDASRLYAERAERDRAVLERMIGYAQSAQCRWRMLL
DYFADDMNGARASAPLCASDVDYRAPDDELGGAMCGACDNCVHPPQVIESPREMREMREK
EQSSPESRMPEFAQGDRVRVRRYGEGVVEMVSADRVAVRFADDETRTFIARYVKRAGH
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacactcacgccctccacgcacgatcgcgcaagccgcgcgatcacgatctcgaa
accgcgctgcgcaaggtcttcggctttccgcatctgcgccccggacaggaagacgtgatc
cgcagcgtgcttgacggcaacgacacgctcgccgtgatgccgacgggcgcgggcaagtcg
ctgtgctatcagttgcccgcgctgcaattcgacggcatgacgatcatcgtgtcgccgctc
atttcgctgatgcgcgatcaggcgacgaaactgaccgaagcgggcatcgcgaccgccgtg
ctcaacagcgcgctgtcggcgagcgaagcgcgcgaggccatgcaggcgctcgcgcgtcat
gagatccgcatgctcttcgtcacgcccgagcggctcgtcgatgccgacttcagcgccgag
ctcaccgcgaaggacatgccgcccatcgcgctcgccgtcatcgacgaggcgcactgcatt
tcgcaatggggccatgatttccggcccgcgtatgtcgagctgatccacgcgatcaaaatg
ctcggccgtccgcccgtgctcgcgctcaccgcgaccgcgacgcccgccgttatcgtcgat
atcgtgcgagagttgcagatgcggcatccgcatgtcattcacacgggcgtgtatcgcgac
aatctgcatttcaacgtcgagcaattgaccaatcccgaagacaggcgcaagcgcgcgatc
gaactcgcgacgcaggaagcgggcagcggcatcgtgtattgcgcgaccgtcgcggaatgc
gaggcgctgcatgccgcgctcgtcgatgcgggcgtttcggccgagcgctatcacgggaag
ttggcatcgggcgcgcgctcggacgcgcaggatgccttcatggcggatcgcgcgcgcgtg
atggtcgcgaccaatgcgttcggcatgggcatcgacaagcccgatatccgttttgtcatt
catgcgcagatgccgggcagtctcgatgcgtactatcaggaagcgggccgcgccgggcgc
gatggcgagcccgcgcgctgcacgctgctcttcgacatgaaggacaggcaagtgcagcag
tttttcatgagcgggcgttatccgagcgcggagacgatcgcgcgcgtcgcggagaaagtg
cgcgagctggcgatggaagacagcggccgcacgctggcgcagccgctcgcgcggttgcgc
gaagccctgccgaacgtgggcgcgaacaagctgcgcgttgcggcgacgctgctcaacgat
atcggcataacgcggcgcacgcggcgcggcggcatgaagctcgtcggcgacggcgcgccg
cttgcgaagctcgacgatgcatcgcgcctttatgcggagcgggccgagcgagaccgtgcg
gtgctcgaacgcatgatcggctatgcgcagagcgcgcaatgccgctggcgcatgctgctc
gattacttcgccgacgacatgaacggcgcacgcgcatcggcgccgctttgcgcaagcgat
gtcgactaccgcgcccccgacgacgaactcggcggcgcaatgtgcggcgcatgcgacaac
tgcgtgcatccgccgcaagtgatcgagagcccgcgcgagatgcgtgaaatgcgcgagaaa
gaacaatcgtcgccggaaagccgtatgccggagttcgcgcagggcgatcgcgtgcgcgtg
cggcgctatggcgaaggcgtcgtcgaaatggtcagcgccgatcgcgtcgccgtgcgcttt
gccgatgacgagactcgcaccttcatcgcgcgctatgtgaagcgcgcagggcactga
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