KEGG   Burkholderia sp. YI23: BYI23_B006840
Entry
BYI23_B006840     CDS       T01711                                 
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
byi  Burkholderia sp. YI23
Brite
KEGG Orthology (KO) [BR:byi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:byi03400]
    BYI23_B006840
Enzymes [BR:byi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BYI23_B006840
    5.6.2.6  RNA 3'-5' helicase
     BYI23_B006840
DNA repair and recombination proteins [BR:byi03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BYI23_B006840
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr DEAD Helicase_C WH3_Lhr ResIII Cas3-like_C_2 DprA_WH TrmB MarR_2 DUF5805 PhoH
Other DBs
NCBI-ProteinID: AET91291
LinkDB
Position
2:complement(794516..798895)
AA seq 1459 aa
MIRKARSADDPLRGFHPAVAGWFRSRFAAPTAAQARAWPLVHARRSTLVAAPTGSGKTLT
AFLAAIDELVRDGIALGGALPDETRVVYVSPLKALSNDIHVNLEAPLAGIAQTLRESGVA
APEIRAAVRTGDTTQQERNAVKKRPPHILVTTPESLYVLLSSDSGRAMLSTTRTVIVDEI
HAVAGSKRGSHLSLSLARLDALCEDAGGARPVRVGLSATQKPIELVAKFLVGERNACEIV
DVGHARARDLALDIPPMPLEAIMSNDMWERVYDRLADLSAQHRTTLVFVNTRRMAERAAR
HLTERLGKEAVAAHHGSLAREHRLAAEQRLKRGELRVLIATASLELGIDIGDVDLVCQIG
SPGSIGAFLQRVGRSGHHVGGTPKGRLFPTSRDDLIECAALLDCVRRGELDALSIPHAPL
DVLAQQITAEVACREWSEDALFERITQAYPYAALDRAHYEAVLRTLAEGYTGRQGVRAAY
VHRDAVSRTLRGRRGGKLTAVTSGGAIPDNADFAVLLEPQGLQIGTVNEDFAVESLAGDI
FQLGNTSYRIVRVEGGRVRVENANGQPPNIPFWLGEAPGRSDELSHAIARLRGEIDARLS
QGSADAAIASLAEETGIDEEAARQIVDYLARSRAALTVLPTQDTLVMERFFDESGGTQLV
IHAPFGSRVNRAWGLALRKRFCRTFNFELQAAATEDAIVLSLTGSHSFALDEVWRYLKSA
TAEHLLIQALLDAPLFGVRWRWNATNALALPRYTGGRKVAPQLQRMKSEDLLAAVFPDQV
ACAENIAGERDVPAHPLVEQTIDDCLHDAMDSEAWLSLLRRIETGAVRLVTRELPAPSPL
AAEILSARPYAFLDDAPLEERRTQAVLARRWTDPQSADDLGALDPEAIESVREEAWPDVT
SADEMHEALTTLACITEAEAQRNPQWEAWLDGLARSGRATRLQIAEHDALWTPVERLACV
RAVYEHAPMHPALRPPPGFDDAWAPDDALVEIVRARLSGAGPSTVPDIARPLALPASAIA
LALTRLEAQGYVMRGRFTPGAGTEEWCERHLLARIHRYTVRRLRREIEPVERQDFMRFLL
EWQRVAPDAHGEGRDALGAVLEQLEGFEAPAVAWEDEILPARIADYSGMWLDELCRAGKL
VWTRPAGRARASGGPVRGTPIVLLPRRHLGAWNALMAPDEAPQLSSRADRVFDALKTHGA
MFFDELLADVRLLRTELEDALGELVALGLVNADSFAGLRALLAPAAKRNAFARRPRRGGL
FIGGMDDAGRWALLRRATPGEARDDGDIEHVALTLLRRYGVVFWRLLEREAQWLPPWRDL
LRVYHRLEARGEIRGGRFVAGLAGEQFALPDAVPLLRDMRKRPKDGALVALSAVDPLNLV
GTLLPGEKVPALAGNRVLYLDGVPVGAVIAGKTRYLGEFEGEGRERVRLALVKRSARSLG
GASAGASVALRDERRVRSS
NT seq 4380 nt   +upstreamnt  +downstreamnt
atgatccgaaaagcccgttccgccgatgaccccctgcgcggcttccatcccgccgtcgcg
ggctggttccgctcgcgctttgccgcgccgaccgcggcgcaggcgcgcgcgtggccgctc
gtgcacgcgcgccgctcgacgctcgtcgccgcgccgacgggctcgggcaagacgctcacg
gcctttctcgccgccatcgacgaactcgtgcgcgacggcatcgcgctcggcggcgcgctg
ccggatgaaacgcgcgtcgtctatgtgtcgccgctgaaggcgctgtcgaacgacatccac
gtcaatctggaagcgccgctcgcgggcatcgcgcagaccttgcgcgaatccggcgtggcc
gcgcccgagatccgcgcggccgtgcgcaccggcgacacgacgcagcaggaacgcaacgcc
gtgaagaagcgcccgccgcatatcctcgtgacgacgccggaatcgctttacgtgctgctt
tcgtccgattcgggacgcgcgatgctctcgaccacgcgcaccgtgatcgtcgacgagatt
catgcggtcgcgggcagcaagcgcggctcgcacctgagcctgtcgctcgcgcgcctcgac
gcgctgtgcgaggacgcgggcggagcgcgcccggtgcgtgtcggcctctcggcgacgcaa
aagccgatcgaactggtcgcgaaattcctcgtcggggagcgcaacgcgtgcgagatcgtc
gatgtcggtcatgcccgcgcgcgcgatctcgccctcgatatcccgccgatgccgctcgaa
gcgatcatgtccaacgacatgtgggagcgcgtctacgaccgtctcgcggatttgtcggcg
cagcaccggaccacgctcgtgttcgtcaacacgcggcgcatggccgagcgcgcggcgcgg
catctgaccgagcgcctcggcaaagaagcggtcgcggcgcatcacggcagcctcgcgcgc
gagcatcggcttgcggcggagcagcgcctgaagcgcggcgagttgcgcgtgctgatcgcc
acggcgtcgctcgaactgggcatcgatatcggcgacgtggatctcgtctgccagatcggc
tcgcccggttcgatcggcgcgtttttgcagcgagtcgggcgctcggggcatcacgtcggc
ggcacgcccaaagggcggctttttccgacttcgcgcgacgatctgatcgaatgcgccgcg
ctgctcgattgcgtgcggcgcggcgagctcgacgcactctcgatcccgcacgcgccgctc
gacgtgctcgcgcagcagatcaccgccgaagtggcgtgccgcgaatggagcgaggacgcg
ctttttgagcgcatcacgcaggcgtatccgtatgcggcgctggatcgcgcgcattacgag
gcggtgctgcgcacgctcgcggaaggctacaccgggcggcagggcgtgcgcgcggcctac
gtgcatcgcgatgccgtgtcgcgcaccctgcgaggccggcgcggcggcaagctgacggcg
gtcacgtcgggcggcgcaattcccgacaacgccgatttcgccgtgctgctcgaaccgcag
ggcttgcagatcggcacggtgaacgaggatttcgccgtcgagagtctcgcgggcgacatc
ttccaactcggcaatacgtcgtaccgcatcgtgcgggtggaaggcggacgcgtgcgcgtg
gaaaacgcgaacgggcagccgccgaacattccgttctggctcggcgaagcgcccggccgc
agcgatgagctttcgcacgccattgcgcggctgcgcggcgagatcgatgcgcggctctcg
caaggcagtgccgatgccgcgatcgcatcgctcgcggaagaaaccggcatcgacgaagaa
gcggcgcggcagatcgtcgattatctggcgcgttcgcgcgccgcgctcaccgtgctgccg
acgcaggacacgctcgtcatggagcgcttcttcgacgaatccggcggcacgcaactcgtc
atccacgcgccgttcggcagccgcgtgaatcgcgcgtggggcctcgcgctgcgcaagcgc
ttttgccgcaccttcaacttcgagctgcaggcggcggcgacggaagacgccatcgtgctg
tcgctgacgggcagccacagctttgcgctcgacgaggtctggcgctatctgaaatcggcg
acggcggagcatctgctgattcaggcgctgctcgacgcgccgcttttcggcgtgcgctgg
cgctggaacgcgaccaatgcgctcgcgctgccgcgctacacaggcgggcgcaaggtcgcg
ccgcagttgcagcgcatgaaaagcgaggatttgctcgcggcggtgttcccggaccaggtc
gcgtgcgcggagaacatcgccggcgagcgcgatgtgccggcgcatccgctcgtcgagcag
acgatcgacgactgcctgcacgacgccatggatagcgaagcgtggctctcgcttctgcga
cgcatcgaaacgggcgccgtgcggctcgtcacgcgcgagctgcccgcgccgtcgccgctc
gcggccgagattctctcggcgcggccttacgcgtttctcgatgacgcgccgctcgaagag
cgccgcacgcaggcggtgctcgcccgccgctggaccgatccgcaatccgctgacgatctc
ggcgcgctcgatcccgaagccattgagagcgtgcgcgaggaagcgtggccggacgtcacg
agcgccgatgaaatgcacgaggcgctgacgacgctcgcctgcatcacggaagccgaagcg
caacgcaatccgcagtgggaagcatggctcgacgggctcgcgcgttcgggccgcgcaacg
cgcctgcagatcgcggagcatgacgcgctgtggacgcccgtcgaacggctcgcgtgcgtg
cgcgcggtctacgagcatgcgccgatgcatccggcgctgcggccgcctcccggcttcgac
gacgcctgggcgcccgacgatgcgctcgtcgagatcgtgcgcgcgcggctgtcgggcgcg
gggccgtcgaccgtgccggacatcgcgcgtccgctcgcgctgcccgcctcggcgatcgcg
cttgcgctgacgcggctcgaagcgcagggctatgtcatgcgcggccgcttcacgccgggc
gccgggaccgaagagtggtgcgagcggcatttgctcgcgcggattcatcgctataccgtg
cggcggctgcggcgcgagatcgagccggtcgaacggcaggatttcatgcgctttctgctc
gaatggcagcgcgtcgcgcccgatgcccacggcgagggccgcgatgcgctcggcgcggtg
ctcgaacagctcgaaggtttcgaggcgccggcggtcgcgtgggaagacgaaatcctgccg
gcgcgcatcgcggattattccggcatgtggctcgacgaactctgccgcgccggcaagctc
gtctggacgcgccccgcgggacgtgcgcgggcgtcgggcgggccggtgcgcggcacgccc
atcgtgctgctgccgcgccgtcatctcggcgcgtggaacgccttgatggcgcccgacgaa
gcgccgcagctttcatcccgcgccgaccgcgtgttcgacgcactgaaaacgcacggcgcg
atgttcttcgacgaacttctcgccgacgtgcggctgttgcgcaccgaactggaagacgcg
ctcggcgaactggtcgcgctcggcctcgtcaacgcggacagcttcgcgggcctgcgcgcg
ctgctcgcgccagcggcgaagcgcaacgcgtttgcgcgccgtccgcggcgcggcggcctg
ttcatcggcggaatggacgatgccggtcgctgggcgcttctgcgccgcgcgacacccggc
gaagcgcgcgacgacggcgatatcgagcacgtcgcgctgacgctgctgcggcgctacggt
gtcgtgttctggcgtctgctcgaacgcgaagcccaatggctgccgccgtggcgcgatctg
ctgcgcgtgtatcaccggctggaggcgcgcggcgagattcgcggcgggcgcttcgtcgcg
gggctcgcgggcgagcagttcgcgctgcccgacgcggtgccgcttctgcgcgacatgcgc
aagcggccgaaggacggcgcgctcgtggcgctgtcggcggtcgatccgctcaatctcgtc
ggcacgcttttgccgggcgagaaagtgccggcgctggcgggcaatcgtgtgctgtatctg
gatggcgtgccggtcggcgcggtcatcgcgggcaagacgcgctatctcggggaattcgaa
ggggaagggcgcgagcgcgtacggctcgcgctggtgaagcgcagcgcgcgttcgctcggc
ggtgcaagcgcgggagcgagcgtggcgctgcgcgatgagcggcgcgtcaggtcttcttga

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