Burkholderia sp. YI23: BYI23_B011060
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Entry
BYI23_B011060 CDS
T01711
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
byi
Burkholderia sp. YI23
Pathway
byi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BYI23_B011060 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
byi03021
]
BYI23_B011060 (rpoD)
Transcription machinery [BR:
byi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BYI23_B011060 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AET91713
LinkDB
All DBs
Position
2:complement(1274704..1276917)
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AA seq
737 aa
AA seq
DB search
MLLRVGRRDDSHSFDPRWRPGQGTQDDAACAYWVFTVPSAVVQQPRVETRAGMANSMTKK
LNDVSVEDDAMQNAESGAAPAAKVEKARARDRRAKEKALLKDAFSSSAPGTVEELEERRG
KLRALIKLGKERGFLTYGEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAPDAETLLL
NDNAPNASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRI
EDGLKHMVMAISACPTTIADILAMAERVQNEEVRVDELVDGLIDPNAQDTDGFSEQEAEA
IESEEEETEEEGDEEEEEEDDGSAQASANAAQLEALKLQSLEKFALISEWFEKMRRAYEK
EGYKSKAYLKAQEAIQTELMNIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVDKCGM
PRAEFITRFPGSETDLEWADKVVAEGHEYSAVLERNIPAIREQQQRLLDLQARVVLPLKD
LKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLE
PDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPSDAALH
ASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSDKLKSFLEGN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
ctgctattgagggtagggcgaagagacgattcacactcgttcgatccgcgatggcgcccc
gggcagggcacgcaggacgatgcagcgtgcgcgtattgggtattcacggttccatcggct
gttgtccagcagccgcgagtcgagactagagccggtatggcgaactccatgacgaaaaag
ctgaacgatgtatccgtcgaagacgacgcaatgcaaaacgcagagtctggcgccgctccc
gcggcaaaagtcgaaaaggccagggcccgcgatcgccgtgcgaaagaaaaagcgctgctg
aaggacgcgttctcgtcgagcgcgcccggcaccgtcgaggaactcgaggagcggcgcggc
aagttgcgcgcgctcatcaagctcggcaaggagcgcggctttctcacttatggcgagatc
aacgatcacctgccggacaacttcacggaaaccgaggcgatcgaaggcatcatcagcacg
ttcaatgacatgggcgtggcggtgtacgaacaggcgcccgatgccgaaacgctccttctg
aacgacaacgcgcccaacgcttcttccgacgacgaagtcgaggaagaggccgaagtcgcg
ctctccaccgtcgattccgagttcggccgcacgaccgacccggtgcgcatgtacatgcgc
gagatgggtacggtcgaactgctgacgcgcgagggcgagatcgagatcgcaaagcgcatc
gaagatggcctgaagcacatggtcatggcgatctccgcgtgcccgacgaccatcgccgac
attctggcgatggccgagcgcgtgcagaacgaggaagtgcgcgtcgacgaactcgtggac
ggcctgatcgatccgaacgcccaggacaccgacggtttctccgagcaggaagccgaggct
atcgaatcggaagaggaagaaaccgaggaagagggcgacgaggaagaggaagaagaggac
gacgggagcgcgcaggccagcgccaacgccgctcagctcgaagcgctgaaactccagtcg
ctcgagaaattcgccctcatcagcgaatggttcgagaagatgcgccgcgcctacgagaag
gaaggctacaagtcgaaggcgtatctgaaggcgcaggaagccattcagaccgagctgatg
aacatccgcttcacggcgcgcactgtcgagcgcctgtgcgacacgttgcgcgctcaggtg
gacgaagtgcgtcaggtcgagcgtcagattctgcatacggtggtcgacaagtgcggcatg
ccgcgcgcggagttcatcacgcgtttcccgggcagcgagacggatctcgaatgggccgac
aaggtcgtcgccgaaggccatgagtacagcgcggtgctggagcgcaacattccggcgatt
cgcgagcagcagcagcggctgctggacttgcaggcgcgcgtggtgttgccgctgaaggat
ctgaaggaaaccaaccgtcagatggcggcgggcgagttgaaggcgcgtcaggcgaagcgt
gaaatgaccgaggcgaatctgcgtctcgtgatttccatcgcgaagaagtacacgaaccgc
ggattgcagttcctcgatctcattcaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaatatcgtcgcggttacaagttttcgacttacgccacgtggtggattcgccag
gccatcacgcgctcgatcgcggaccaggcgcgcaccattcgcattccggttcacatgatc
gagacgatcaacaagatgaaccgtatctcgcggcagattctgcaggaaaccggtctcgag
ccggatccggcgacgcttgccgaaaagatggagatgcccgaggacaagatccgcaagatc
atgaagatcgcgaaggagccgatctccatggaaacgccgatcggcgacgacgacgattcg
catctcggcgatttcatcgaggatacgaacacggtggcgccttccgatgccgcgctgcat
gcatcgatgcgtgatgtggtgaaggacgtgctcgattcgctgacgccgcgcgaggcgaag
gtgctgcgtatgcggttcggcatcgagatgagcaccgatcacacgctggaagaggtcggc
aagcagttcgacgtgacgcgcgagcgtatccggcagatcgaggcgaaggcattgcgcaag
ctgcgccatccgagccggtcggacaagctgaagtcgttcctcgagggcaactga
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