Burkholderia sp. YI23: BYI23_D014640
Help
Entry
BYI23_D014640 CDS
T01711
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
byi
Burkholderia sp. YI23
Pathway
byi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BYI23_D014640 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
byi03021
]
BYI23_D014640 (rpoD)
Transcription machinery [BR:
byi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BYI23_D014640 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AET94974
LinkDB
All DBs
Position
byi_1p:complement(1686194..1688140)
Genome browser
AA seq
648 aa
AA seq
DB search
MSSSHRKEAAEDPQATRKMSASRRLKRAGWPLVETPISADPVKSDRQQGTDEHEWAIRAL
IRIGKDQGFVTHAQINDHLPGDLAQMTMVEDISRAFHEMGLAVYEHAPSTETLLLDDAVS
NDTLDDQSGEDDEFALSAVDSEFGRTTDPVRMYMREMGAKQLLTRKAEVEIARRIEDSLN
EMIQAIASCPPTISMILASAQLVAEGKLGIDEMIDGIDDESMPAAAEVDESAPHNCQSDS
EAEDNADQLRLTRLMTDGLALFGRVRECVDQLREAGETHAPNALETIRKELGRVRFTARI
VGQACDDMQQRLARVRQIEQRISSIAIDRCSMPREQFIALFPGHETDLDWTTKTAAKSLD
YGASLERSVAAVRAEQYQLMDIERHAAMPIQRLKQTSRHLLAAESRMRRAKDEMIEANLR
LVISIAKKYVNRGVHFLDLIQEGNIGLMKAVDKFEYKRGWKFSTYATWWVRQAVTRAVAD
QARTVRIPVHMMEIINKLNRISNELRQHTGKPALPAALAERMELPEAQIRGIQKMAMHPI
SLQTPANDDADATLGDLIEDANVKSPLEVVVRTGMRVAIDDALNTLLPREARVLRMRFGI
NVPTEFTLGEVSSHLGVSRERVRQIESQAIRKLMHPSRADKLRSFIDR
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtccagttcgcatcgaaaggaagcagcggaagatccgcaagctacgcgcaaaatgtca
gcatcgcgacgattaaaaagggcaggttggccgctggtcgaaacgcctatttctgcagat
cccgtgaagtcggatcggcagcaaggcacagacgaacacgaatgggcgatacgcgccttg
atccgtatcggcaaggatcaaggctttgtcacacatgcccagatcaatgatcatttgccc
ggcgaccttgcgcaaatgaccatggtcgaagatatttcacgcgccttccatgaaatgggt
ctcgccgtctacgagcacgcgcccagcaccgaaacgctgctgctcgacgacgcggtttcg
aacgatacccttgacgatcagtcgggcgaagacgatgaatttgcgctttccgctgtggat
agcgaattcggccggaccaccgatccagtgcgcatgtacatgcgcgagatgggcgcaaag
cagttgctgacgcgtaaggccgaggttgagattgcccggcgtatcgaagatagtctgaat
gagatgattcaggcgatcgcgtcctgtccccccactatctcgatgatcctcgcaagcgct
caactagttgcggagggcaagcttggcatcgacgaaatgatcgacggtatcgatgacgag
agcatgccagcagcggcggaggtcgacgaatctgcgccccacaattgccaaagcgactct
gaagccgaggacaatgcggaccagttgcggttgacgcgactaatgaccgacggacttgcg
ctctttgggcgggtacgcgagtgcgtcgatcagttgcgcgaagcgggagagacccatgcc
ccgaatgctctagagaccattcgaaaggaactggggcgcgtgcgcttcacagctcgcata
gtgggccaggcttgtgacgacatgcagcagcgtctggcgcgcgtgcgtcaaatcgagcag
cgaatatccagcattgcgatcgaccggtgtagcatgccgcgtgagcagtttattgcattg
ttccccggccacgaaaccgacctcgactggacgaccaaaaccgctgcgaaatcgctcgat
tatggcgcttcgctggaacgcagcgtggccgctgttcgggccgagcagtaccaattgatg
gatatcgaacggcatgcggcaatgccgattcagcggttaaagcaaaccagtcggcatctg
ctcgctgctgaatcacgcatgcggcgcgcaaaagacgagatgatcgaggccaatctgcgc
ctcgtgatctcgatcgccaagaaatatgtgaatcgcggcgtacattttttggatttgatt
caggaaggcaacatcggcctgatgaaggccgtcgacaagttcgaatacaagcgcggctgg
aaattctcgacttatgcaacttggtgggttcgccaggcggtcacgcgcgcggtcgcggac
caggcgcgcaccgtccgcatacctgtgcatatgatggagattatcaacaagctcaaccga
atttcgaatgaacttcggcagcacactggcaagcccgcgctgcccgcagctttggccgaa
cgtatggaattacccgaggctcaaatccggggcattcagaagatggcgatgcatccgatc
tcgcttcaaacgccggcgaatgatgacgctgacgcaacgctcggggacctgattgaggat
gcgaacgtgaaatcgcctcttgaggtcgtcgtgcggaccggaatgcgtgtcgccatcgac
gatgcgttgaacacgcttttgccacgcgaggcaagagtgcttcgcatgcgcttcggcatc
aatgtgcccaccgaattcacacttggcgaagtaagctcgcatctgggcgtgtcgcgggaa
cgcgttcgtcagatcgagagccaggctatccgcaaactgatgcatcctagtcgcgcagat
aagctacgctcgttcattgatcgctag
DBGET
integrated database retrieval system
