Bipolaris zeicola: COCCADRAFT_106660
Help
Entry
COCCADRAFT_106660 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
bze
Bipolaris zeicola
Pathway
bze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCCADRAFT_106660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bze03021
]
COCCADRAFT_106660
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_106660
Transcription machinery [BR:
bze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCCADRAFT_106660
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
COCCADRAFT_106660
U7-dependent histone pre-mRNA processing factors
COCCADRAFT_106660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
19143435
NCBI-ProteinID:
XP_007716309
JGI:
106660
UniProt:
W6XW27
LinkDB
All DBs
Position
Unknown
AA seq
755 aa
AA seq
DB search
MTSQTIQQMESARSLALGDGRYYPTIIPGVLPIIGYSEDQSIEIQRWGAEFLAEAFASPA
WPQEAKQSSAPSVLATLKAYLENVDDKSVIKSAIQAAASVYPLVYKHTVSDPSDSQNWGL
MFGIKANILRRMDSAAPGVRICCVKFLQQVVLVQTPGVADPRRADHNDISLSIVPRDHPL
IPYASLEAEGHGLLDRLLDIIHGDHSDGLLVTATLNSLGMLIHRRPNAANKILNSVFNFN
PLKLANSPMTPKNKVIIKSIERTTRALLVNIMKRNPENPINGRIQQFLERMHRARVEFFE
ESNRKRPAPAEPTDGLDHAKRQRLVAEPPSRTPSVQPLPPGPISWRQLYTLNSEGSTANF
DVQNFKDPEQLVRIVVPVLQSVNPQKLEQAINAVRARYQTLRQNAANQPIQPPSAPAAED
EEEYEPDFEPEDAEQIMNKLDGIPSNPFPTQQGPSTALAPFKLPEAPPLSEQDVQKYGDM
TVHRAFGMLSSVDETQKSKATKGGFNRLAATDYSRDAWVTILSRLATRASAGLDDPIDGI
KDEYAVKSTTRSSSNPKISDSIRDSLYQYILYDWKRRIDVAISWLNEEWYNDMILTQSAE
SPLPNGTVNGISPSKPPRGNYHRCALRLIDGILPYIEHTDKILLRFLSEIPSIDYTLLVR
LKKMAEDPERIDLACNALHYLYMFRPPVRKIVVDVLAEMWAENERAKPSARKLLLRWRPE
VLGSEMAGNNTTQLVVKSEGGVESAAGKVEVGAAS
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgcaaacgatacagcagatggagtcggcccggtcgctcgcgttaggcgacggt
agatactatcctaccattataccgggtgtgctccctatcatcggttacagtgaagaccag
agcatcgagatacagcgctggggtgccgagtttttggcagaggcctttgcatcgccagca
tggccccaggaggccaagcagagcagcgcgccctcggtgctggctaccctcaaggcctac
ctggagaatgtcgatgacaagagcgtcatcaagagtgccatccaggcggccgcgagcgtg
tacccgctcgtatacaaacatactgtctccgaccccagcgattcgcaaaattggggcctc
atgtttggcatcaaagcaaacattttgcgacgaatggactcggccgcccctggcgtgcgt
atatgctgcgtcaagttcctccaacaagtcgtcctggtacagacaccaggcgttgcagac
cctaggcgcgccgatcacaacgatatttccctctccattgtgccccgcgaccacccgctt
ataccgtatgcgagcctcgaggctgaaggacatggattactggataggctgctggatatc
atacatggggatcacagtgacggattgctcgtgactgccaccttgaacagcttgggcatg
ctgatccatcgccgaccaaatgctgcaaataaaatcttgaacagtgtcttcaacttcaat
cccttgaagcttgccaattcgccaatgacgcctaagaacaaggtcattatcaagtcgatt
gagcgtacaacaagggcactgctcgtcaacattatgaagaggaaccccgagaacccaatc
aatggacgcatacaacagttcctggaacgcatgcatcgtgcccgtgtggaattcttcgag
gaatctaatcgtaagcgaccagcacccgctgagccgaccgatggccttgatcacgccaag
agacaacgacttgtggctgagccccccagtcgtacaccctctgttcagcctttgccgcct
ggtccaataagttggcgacaattatatacgctcaactctgagggcagcactgcaaacttt
gatgtgcaaaatttcaaagatcctgagcaactagtcaggattgtagtgcctgtcctgcag
tcagtcaacccacaaaagcttgaacaagcaatcaatgccgtccgcgctcggtatcagaca
ctgcgccagaatgctgcgaaccagcctattcagccaccaagcgctcctgctgcagaagac
gaagaggaatacgagcccgactttgaaccagaagatgcggaacaaatcatgaacaagctt
gacggcatcccatcaaatccctttccaacccaacaaggcccatccactgctctagcaccc
ttcaagctgcccgaagcacctccattatccgaacaggatgtccagaagtacggtgacatg
accgtacatcgcgccttcggcatgctgagcagtgtagatgagacacaaaagagcaaggcc
acaaagggtggtttcaaccgtctagcagcaacagactacagccgcgacgcctgggtcacc
atcctctcccgcctcgccacacgcgcaagcgccggtctcgacgaccccatcgatggcatc
aaagacgagtacgccgtgaaaagcaccacccgtagcagcagcaaccccaaaatcagcgac
tccatccgcgactccctctaccaatacatcctctacgactggaaacgccgcatcgacgtc
gcaatctcctggctcaacgaggaatggtacaacgacatgatcctcacccaatccgccgag
tcccctttaccaaacggtactgtaaacggcatttcgccctccaaaccgccgcgcggaaac
taccaccgctgcgccctccgcctcatcgacggtattctgccctacatcgagcacacggat
aaaatccttctgcgtttcctctccgaaatcccctcaatagactacaccctccttgttcgc
ctcaagaaaatggcagaggacccagagcgcatcgatctcgcatgtaacgctctacactac
ctgtacatgtttcggcccccagtccgcaagatcgtcgttgatgtgctcgcggagatgtgg
gcggagaatgagagggccaagccgagtgcacgcaagctgctgcttagatggaggcccgag
gtcctgggtagtgagatggcggggaataacacgacgcagttggtagttaaaagtgagggg
ggtgtggagagtgctgcgggtaaagtggaagtcggggctgcatcgtga
DBGET
integrated database retrieval system
