Bipolaris zeicola: COCCADRAFT_21839
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Entry
COCCADRAFT_21839 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
bze
Bipolaris zeicola
Pathway
bze03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
COCCADRAFT_21839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bze03021
]
COCCADRAFT_21839
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_21839
Transcription machinery [BR:
bze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
COCCADRAFT_21839
RNA polymerase I system
COCCADRAFT_21839
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
COCCADRAFT_21839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ADH_zinc_N
KOW5_SPT5
KOW4_SPT5
Spt5-NGN
Spt5_N
KOWx_SPT5
ADH_zinc_N_2
ADH_N
KOW2_Spt5
KOW1_SPT5
KOW
CTD
NmrA
Eno-Rase_NADH_b
ATP-synt_F
adh_short
DUF1506
Cornifin
Motif
Other DBs
NCBI-GeneID:
19145067
NCBI-ProteinID:
XP_007706849
JGI:
21839
UniProt:
W6YHM0
LinkDB
All DBs
Position
Unknown
AA seq
1371 aa
AA seq
DB search
MKAIHIEKFVKNIADLRPCSIPSPERKKPEDIHIKITHSAVTHVDLLYAQGLHQNNRRHI
KPPFVLGTEFSGIVVSSPPKSSFKPGVRVFGGGLGAYAEEIWASEEAIRHVPEQWTNAEA
CAVGGSGSVSYGALLDVCKVKAGETVLVLGASGGLGVMAVQIAKAVGAKVIAVVGDEEKA
AMVRSIGADGTVNYHDENWEDRVKQLTKDGEGVDVVYDGIGAVESGVKCLKYRGRLVIVG
FAARNGNIENIRANRILLKSITVHGYRFGEDGRRDPERTKDVWDGFVRLVDAGSIRPVVY
KENYNGLEAVGRALEDVKAHKAWGRAVVRVSLRQPPYRRSSITPHFPTAMASYGSDPEDE
EEDFNPAPEIDEDDVAPRGNASRRPAAEDDDDEGDGINMTGNDDEDEEGGGIDVDDDDDD
DDDEDDEEDEDDEDVVARPAKRRKKAKRNMFIDVEAEVDEDEEEEEEGDDEGVDEVHPDD
LLEPTGADLDDRHHRELDMRREVNAQRDVEEIAKEFDEKYRRREMQSARRGGAGAVPLAL
PTVDDPSIWGCKCRPGKEREIIMAIQKRLDDKIRTGQPVQVYSAFERGPTGPQSGFLYVE
ADSKQAVVELIEGIQNVFMGSGQFSIPPKERPDLLRKKKRAPLEVGKFVRMLRPPTYKGD
LAKVVEVSTNGLDCVVQLVPRLDYGLNDDASAAGDNKRKRGFFGRQTERPPAKLFNEAEA
KKRHMKHLSMTGSGNQRAYTYKGEDYQNGFLIKEVKVNWVSTEKVNPKMEELQFFSVQNA
DGTETMDLLAVQAAQKAADSGSAFAAGDNVEIYTGEQKGIRGTTVTVTGDILTLRVSEGD
LRGRRIDAPVKTLRKLFRDGDHVKVIGGSKYVDEVGLVTRIKDDKITLLCDSTQQEITVF
SKDLKRAADSANVGADSNFDLYDFVQIDASTIGCVVRVDREVLRIVDQQGDVRTLLHTQV
SQIVGRNKHAVATDRDGSEIRHEDDVKEHGGEGRQGKVLYIHRGTLFVRNRELVENQGIF
VVRSNNVVTMAAKSGRAQAQGPDLSGINPALNAGANGNTNAMPPPRASFGRDKLIGKTVT
IRKGAYKGLLGIVKDTMNDEARIELHTKNKQVSVKKELLTVKDPITGASMDIGGKFPNRS
RGGFSGGQTSYGGGGGGASGGRTPGWGTSGGGRTPGWGGSGSGGAGGRTPGWGGSGGAGG
RTPGWGGDGGRTAYGGGNGSRTAYGGGDGSRTAYGGATAYGGATSYGGGTAYGGNDGNRT
SYGGFSSGGRTPAWGGSPGNAASKSGGLSAPTPGAYNAPTPGAYAAPTPGGYGAYSAPTP
GGPPMDAPTPGNYSAPTPGDSSGGRYGAATAPTPGGWDVATPAPSGDPGYD
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccattcatattgaaaagttcgtcaaaaacattgcagacctcaggccttgctcc
attccaagtccagaacgtaaaaagccagaggatattcatataaagatcacgcattcagca
gtaacccatgtcgatcttctttatgcccaagggctgcaccaaaacaaccgacgtcatatt
aagcctccgtttgtgttaggcacagagttctctggcatcgtcgtatccagtcctccaaaa
tcgtctttcaagcctggtgtccgcgtatttgggggcgggctaggcgcttatgctgaagaa
atctgggcctctgaagaagcgatacgccatgtaccggagcaatggacgaatgccgaggca
tgcgcagtgggtggtagcggatcagtaagttacggcgcattgcttgatgtttgcaaagtc
aaagctggagagactgtacttgtgttgggcgcaagtgggggtcttggagtcatggcggta
cagattgcaaaagctgttggcgcaaaggttattgctgtggtaggtgacgaagagaaagcc
gccatggttagaagtattggcgcagatggcactgtcaactatcacgatgaaaattgggaa
gaccgtgtcaagcaactgacgaaagacggcgagggtgtagatgtagtgtacgatggcatt
ggcgctgtggagagtggagtcaagtgtttgaagtaccgcggtcgtctggtgattgtgggg
tttgcagcaaggaacggaaacattgagaacatccgtgcaaaccgcatacttctcaagtca
ataacggtgcatggctatagatttggcgaagacgggcgacgggatccagagaggacaaag
gatgtatgggatggcttcgtgcgcttagttgacgcagggagtatacgaccggtagtttac
aaagagaactataatgggttggaagcagttggtagggcgctggaggatgtgaaggcgcac
aaggcctgggggagagcagtggtgagagtatctttgcgacaacccccgtacagacgttca
tccatcactccacattttcccaccgccatggcgtcctacggaagcgacccagaggacgag
gaggaggacttcaatcccgcgcccgaaattgacgaggatgacgtcgctcctcgcggcaac
gcctcgcgcagacccgccgctgaagatgacgatgatgaaggcgatgggatcaacatgaca
ggcaacgacgacgaagatgaagaaggtggtggcatagacgtcgacgacgatgacgacgat
gacgatgacgaggacgacgaagaagacgaggacgacgaggatgttgtcgcccgacctgct
aaacggagaaagaaggcgaagcgcaacatgttcattgatgtcgaagccgaagtcgacgaa
gacgaagaggaagaggaggagggcgacgacgaaggtgtcgatgaagtgcatcccgacgat
ctcctcgagcccacgggcgccgacctcgacgaccgtcaccaccgcgagctcgacatgcgc
cgtgaagttaacgctcaaagggatgttgaagaaatcgcaaaggagttcgacgaaaagtac
aggcggagggaaatgcagagcgctcgtcgcggtggtgcaggcgctgtacctttggcgctg
cccacggttgacgatccatccatttggggttgcaaatgccgtcctggaaaggaacgcgag
ataatcatggcgatccaaaaacgccttgacgacaagattcgcaccggccagcctgtgcag
gtctactcggcctttgaacggggtcctacaggtccacagtctggattcctttacgttgag
gccgactctaagcaggctgtggtagagcttattgagggtatccagaatgtcttcatgggc
tctggccagttctcaatccccccgaaggagcgtccggatcttctccgaaagaagaagcgt
gcgccattggaggtcggaaagtttgtgcgcatgctacgaccgcccacatacaagggcgat
cttgcaaaggtcgtcgaagtctcgaccaacggtctcgactgtgtcgtacaactcgttcca
cgcctggactatggtctcaacgacgatgcaagcgctgctggagacaacaagcgcaagcga
ggcttcttcggacgacaaaccgagcgcccccctgcgaagctgttcaacgaagccgaggcg
aagaagcgacacatgaagcatctcagcatgactggatcgggcaaccagagggcatacaca
tacaagggtgaagactaccagaacggttttctcatcaaggaagtcaaggtcaactgggtc
agcactgagaaagtcaaccccaagatggaggaactgcagttcttctcagttcagaacgct
gatggcacagagaccatggatctcctagctgtccaagctgcgcaaaaggctgccgactcc
ggatcggcttttgccgctggcgataacgtcgaaatctacactggtgaacaaaagggcatt
cgcggtacgactgttactgtaacaggtgacattctcacgctgcgagtgagcgagggcgac
ctgaggggcagaaggatcgacgctcctgtcaagacactgcgaaagctgttccgcgatggt
gatcacgtcaaggtcattggtggaagtaaatatgttgatgaagtcggtctcgttacgagg
atcaaggacgacaaaattacgctgctttgcgactcgacccagcaggaaattaccgtcttt
agcaaggacttgaagcgtgctgcggactcggcaaacgttggcgccgactccaactttgac
ctctacgactttgtgcagattgatgcttccaccattggttgcgttgttcgtgtcgaccgc
gaagttctgcgaatcgtcgatcaacaaggcgatgttcgcacactcctccatacccaagtc
tcacagattgtcggccgaaacaaacacgcagtagcgaccgatcgcgacggatctgaaatc
agacatgaggacgacgttaaggagcacggcggtgaagggcgacaaggcaaggttctgtac
attcacaggggtacactctttgtccggaaccgtgagcttgtcgagaaccagggtatcttt
gtggtccgcagtaacaacgtcgtcactatggcggcaaagagcggtcgtgctcaagcgcaa
ggtcctgatctcagcggtatcaaccctgctcttaacgcaggcgcaaacgggaacacgaat
gccatgccaccaccacgagcttctttcggccgtgacaagctgattggcaagactgtgacg
atccgcaagggcgcttacaagggtcttctcggaattgtcaaggacacgatgaacgacgaa
gcgcgcattgagttgcataccaaaaacaagcaggtttctgtaaagaaggagcttctcaca
gtcaaggatcctattaccggtgccagcatggacattggcggcaagttccccaaccgttcg
cgcggtgggttctcgggcggtcagacaagctatggcggtggtggtggtggcgcatctggc
gggcgaactcctggatggggcacctctggtggtggtcgtacgcctggttggggaggcagt
ggcagcggaggagccggtggccgtacaccaggctggggaggtagcggaggcgctggtggg
cgaacacctggctggggtggagatggcggacgcacagcctatggcggaggaaacggttca
cgaaccgcttatggtggtggtgatggctcccgaacagcatacggcggcgcaactgcctat
ggcggtgcgacatcgtacggcggaggaacggcgtatggtggcaacgacggcaaccgtaca
tcatatggtggtttcagctcgggaggacgaacacccgcatggggtggatcacctggcaac
gccgcctcgaagtcgggtggtttgtctgctcctacgcctggggcatacaacgcccctact
ccaggtgcgtatgccgctcccacgcctggtggatacggtgcatattctgcacctacacca
ggtggtccaccaatggacgctcctacgccgggcaactactctgcgccgacaccaggagat
agctctggtggcagatacggtgctgctaccgcaccaacaccgggtggttgggacgttgca
acaccagcaccaagtggtgatccaggatatgattag
DBGET
integrated database retrieval system
