KEGG   Bipolaris zeicola: COCCADRAFT_2284
Entry
COCCADRAFT_2284   CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
bze  Bipolaris zeicola
Pathway
bze03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    COCCADRAFT_2284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bze03021]
    COCCADRAFT_2284
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_2284
Transcription machinery [BR:bze03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     COCCADRAFT_2284
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     COCCADRAFT_2284
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_4 zf-CCCH_3
Other DBs
NCBI-GeneID: 19145289
NCBI-ProteinID: XP_007708992
JGI: 2284
UniProt: W6YG12
LinkDB
Position
Unknown
AA seq 255 aa
MTEVMTSVAAPMSEEKSAEARPPQYTFKFSEFLRREYRFGLNPDRPTCKAYLQGHCPDGS
KCPNKHNVSSSYNNLVCKHWLRGLCKKGETCEFLHEYNLRRMPECSYYARTQTCSNGDDC
LYLHLDPDAKRPSCPHYDRGFCPLGPHCALKHNKKDKLCPFYLCGFCPEGKGCKYGAHPR
YPTDLKKPEVRVEKSAEELEAEKLEREREMMKREEEERERDERNGHQGGRGFRGNWDRKK
RGGRRGRGGRGRGEF
NT seq 768 nt   +upstreamnt  +downstreamnt
atgacagaagtcatgacatccgtagcggctcccatgtcagaagaaaagtccgccgaggcc
cggccgccccaatatacctttaaattcagcgagtttcttagacgtgaatatcgatttggc
ctaaaccccgatcgcccaacctgcaaagcatacctccaaggccactgtccagacggcagc
aaatgccccaacaagcacaatgtctcttcgtcctacaacaatctagtatgcaaacactgg
ctccgcggcctctgcaaaaaaggcgaaacctgcgaattcctccacgaatacaacctccgc
cgcatgcccgaatgctcctactacgcacgtacacaaacctgctcaaacggcgatgactgc
ctgtacctgcacctggaccccgatgccaagcgcccttcatgcccacactacgaccgcggc
ttctgcccccttggcccacactgcgcgctgaagcacaacaagaaagacaagctgtgtccc
ttttacctgtgcgggttttgtccagagggcaagggctgcaagtacggtgcgcacccgcgg
taccccactgatcttaagaagccagaggtgcgtgtggagaagagtgctgaggagcttgag
gcggagaagttggagcgcgagagggagatgatgaagagggaagaggaggagagggagagg
gatgagaggaatgggcatcagggaggacgtgggtttaggggtaattgggatcgtaagaag
cgtggaggacgacggggtaggggtggtaggggtcgtggagagttttaa

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