Bipolaris zeicola: COCCADRAFT_26292
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Entry
COCCADRAFT_26292 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bze
Bipolaris zeicola
Pathway
bze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCCADRAFT_26292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bze03041
]
COCCADRAFT_26292
03009 Ribosome biogenesis [BR:
bze03009
]
COCCADRAFT_26292
Enzymes [BR:
bze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCCADRAFT_26292
Spliceosome [BR:
bze03041
]
Complex A
U2 snRNP components
U2 related factors
COCCADRAFT_26292
Complex B
COCCADRAFT_26292
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
COCCADRAFT_26292
Ribosome biogenesis [BR:
bze03009
]
Eukaryotic type
90S particles
Helicases
COCCADRAFT_26292
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
SRP54
AAA_19
Flavi_DEAD
AAA_23
T2SSE
nSTAND3
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
19145976
NCBI-ProteinID:
XP_007712278
JGI:
26292
UniProt:
W6Y6E6
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MTAMPKREYENDDSARVKRVKTESTGKGDVDAASNPYLAHWNDTKDSAATGQGLQGFKRH
ATTTAQANAAENGPNNPFTGRPLSKKYMSILEKRRDLPVHQQRDEFLKLYQESQILVFVG
ETGSGKTTQIPQFVLFDDLPQAEAKMVACTQPRRVAAMSVAQRVAEEMDVELGEEVGYSI
RFEDKTGPNTILKYMTDGMLLREAMNDHNLTRYSTIILDEAHERTLATDILMGLLKEVVL
RRPDLKLIIMSATLDATKFQKYFHNAPLLAVPGRTHPVEVFYTPAPERDYVEAALRTVLQ
IHATEPEGDILLFLTGEEEIEDACRKINLEAQDLSREGGAGPLVVYPLYGTLPPAQQQKI
FNPAPPPSTPGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS
PISKASAQQRAGRAGRTRPGKCFRLYTEAAFKKELIEQTYPEILRSNLASTVLELKKLGV
DDLVHFDLMDPPAPETLMRALEELNYLACLDDEGELTTLGSLASQFPLDPALAVMLITSP
EFYCSNEMLSLTALLSVPQIFVRPANNRKRADEMKDLFAHPKGDHLTMLNVYHAFKSEEA
QANPKQWCHDHFLSYRALQQADNVRLQLKRIMEREELELVSTPFENKKYYENIQRALVAG
FFMQVAKRDGNGKSYITVKDEQNVLLHPSTVLAEDSEWVIYNEFVLTTKNYIRTVTSVKP
EWLMDISPNYYDLSQFKKGEIKTALQRVVTKIQRKEAEKGGRR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgactgctatgcccaagcgcgagtacgaaaacgacgacagcgcccgcgtcaagcgcgtc
aagactgaatccaccggcaaaggcgacgtggacgccgcctccaacccgtacctcgcgcac
tggaacgataccaaagacagcgccgccaccggccagggcctacagggcttcaagcgccat
gctaccaccactgcgcaagccaatgccgcagagaacgggcccaacaaccccttcactggc
cgccccctctccaaaaagtacatgagcatcctcgagaagcgccgcgacctgcccgtccac
cagcagcgcgatgagttcctcaagctctaccaggagtcgcagatccttgtctttgtcggt
gagactggttccggaaagacgacccagattccccagttcgttctctttgacgaccttccc
caggccgaggccaagatggtcgcttgtacacagcctcgtcgtgtcgctgccatgtcggtg
gcccagcgtgtggctgaggagatggacgtcgagctaggcgaagaggtcggatacagcatt
cgtttcgaggacaagacggggcccaataccattctcaagtacatgacggatggaatgttg
ctgcgtgaggccatgaacgaccacaacctcacgcgctacagcacaatcatcctcgatgag
gctcacgagaggaccttggccaccgatatcctcatgggtctgctgaaggaagttgtcctg
cgcaggcccgatctcaagctcatcatcatgagtgccactctcgacgctaccaaattccaa
aagtacttccacaacgccccgctcctcgccgtccccggtcgaacccaccccgtcgaggta
ttttatacccctgcgcccgagcgcgactacgtcgaggccgctctccgcactgttctccaa
atccacgctactgaacccgagggtgatattctgctattcttgactggtgaggaggaaatt
gaggatgcatgcagaaagatcaaccttgaagcccaagatctcagtcgcgagggcggtgcc
ggcccattggttgtatacccgctctacggaactctgcctccggcgcaacaacaaaagatc
ttcaatcctgctcctcccccatcaactcctggtggccgtcctggacgaaaagttattgtt
tctaccaacattgctgaaacatctttgactattgatggaatcgtctatgtcgtagatcca
ggattcagcaagcaaaaagtgtacaaccctcgtatccgtgtcgagtcgctgttggtatcg
cccatctccaaggcatctgcacagcaacgtgctggacgtgctggacgtacgcgccctggt
aaatgcttccggttgtataccgaggctgccttcaagaaggagctcattgagcagacatat
cctgaaattctgcgctcaaacttggcaagcacggttctagagctaaagaagcttggcgtt
gacgatctggtacattttgatctcatggatcctcctgcgcccgagactctgatgcgtgcg
ttggaagagctcaactacctggcatgtctggacgatgagggcgaacttaccacgctggga
agtctcgcatctcaatttcccctggaccctgcgttggcagtcatgctcatcacctccccc
gaattttactgctctaacgagatgctgtctctcactgcacttctctctgtgcctcaaatc
ttcgtccgtccagccaacaaccgcaagcgagcagacgagatgaaggacttgttcgcgcac
cctaagggcgaccacctcacaatgctgaacgtctaccatgcgttcaagagcgaagaggcg
caggcaaatccaaagcaatggtgccatgaccacttcctatcataccgagcgcttcaacaa
gccgacaacgtccgtctccagcttaagcgcataatggagcgtgaggagttggagcttgtg
tctacaccatttgagaacaaaaagtactacgagaacatccaacgtgcactcgtcgcaggc
tttttcatgcaagtcgctaagcgtgatggcaacggcaagagttacattacagtcaaggat
gagcaaaatgttcttctgcatcccagcacagtgctggctgaggacagcgaatgggtcatc
tacaacgaatttgtgctcactacgaagaactacatccgaaccgttacctccgtcaagccc
gagtggctcatggatatttctcccaattactacgatttgtcgcagttcaagaagggcgag
atcaagacggcactgcaacgcgttgtcaccaagattcaacgcaaggaggctgagaaggga
ggacgacgatga
DBGET
integrated database retrieval system
