Bipolaris zeicola: COCCADRAFT_2872
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Entry
COCCADRAFT_2872 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bze
Bipolaris zeicola
Pathway
bze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCCADRAFT_2872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bze03041
]
COCCADRAFT_2872
Enzymes [BR:
bze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCCADRAFT_2872
Spliceosome [BR:
bze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
COCCADRAFT_2872
Complex C
U5 SnRNP specific factors
COCCADRAFT_2872
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
Motif
Other DBs
NCBI-GeneID:
19146454
NCBI-ProteinID:
XP_007709675
JGI:
2872
UniProt:
W6YEA0
LinkDB
All DBs
Position
Unknown
AA seq
2212 aa
AA seq
DB search
MSKDQNNLAQFKYAAMSNLVLQADRRFTSRRPDEHTGDPESLAGRINIRDMGARTARDSA
SAQTKKLKVPGVERGNLGEGGDVLEREQRKRKRDDGTSAFGAIATADLNIEGLTYKPRTP
ATRQTFELITTIVSRALGDVDPATTRSAADQVLEYLKDDSMKDFDKKKEVDDLLGTSMGA
KEFNELVNLGKKITDYDAQDDEEGGDEEMADGDGADNGDNQGVAVVFDDEEEDEDGPQTF
EVRDADSSDEEDEAEAPIEQIGGDDSKDAGFADTEETIIQGDTAISDRKNGADQLIPAHE
IDAYWLQRQIGQIYEDAHIQQEKTQEALKFLAGVSEDGEEKELREIENDLMDLFDYEHHE
LVAKLVLNRDRVVWVTRWRRAAEDNDERTAVEREMKAAGQQQILQELRARETGIKAEEGA
GTGKMKFNLKDISLPEVSNDVEMADAKPEGIVGGLQPSSRLVNLDNIVFDQGNHLMTNAS
VKLPQGSTRRQFKGYEEIHVPAPKAKRDPNEPPLMPTSELPDWARPGFGNSKSLNRIQTK
CFPTAFNDDGNMLICAPTGSGKTNVAMLTMLREIGKHRNPTTGEIALDDFKIIYIAPLKA
LVAEQVGNFGKRLEPYGIKVSELTGDRQLTKQQIAETQIIVTTPEKYDVITRKATDTSYI
NLVRLICIDEIHLLHDDRGPVIESIVSRTLRHSEQTGDHVRIVGLSATLPNYRDVASFLR
VDPDKGLFHFDGTFRPCPLKQEFIGVTDKKAIKQLKTMNDVCYTKVLEQVGEHRNQMLIF
VHSRKETAKTAKYIRDKALEEETIGKILRSDAASREILREESESIQNADLKDVMPYGFGI
HHAGMSRADRTSVEDLFADGSIQVLVCTATLAWGVNLPAHTVIIKGTQIYSPEKGSWVEL
SPQDVLQMLGRAGRPQYDTYGEGIIITTQSEIQYYLSLLNQQLPIESQLISKLADNLNAE
IVLGNVRSRDEAVDWLGYTYLFVRMLRSPALYRVGPEYENDTVLEQRRVDLIHAAAHVLE
KCSLIKYDRKTGALNPTELGRIASHYYITHNSMATYNMHVQPGISAIELFRVFALSEEFK
YIPVRQDEKLELAKLLGKVPIPVKEGVEEPQAKINVLLQAYISRLKLEGLALMADLVYVT
QSAGRILRAIFEICLKKGWSQVAKLALDMCKMAEKRMWPTMTPLRQFPTCPRDIVQKAER
IDVSWSSYFGLDPPSMGELLGMPKAGRLVCGLVEKFPRLQIEATPRPVTRSLLRLELTIR
PDFVWDNELHGTSEAFWILVEDCDGEQVLFHDTFILRRDYADGDVNEHLLEITVPIDEPM
PPNYFITVLSDRWMASETKLAVSFQKLILPAKFPAHTPVLDLQPLPVSALKRKEYMGLYE
NIGRFNKVQTQTFNTLYTTDDNALIGASTGVGKTICAEFAILRHWGSGDEGRIVYLAPFQ
ELVDNQYKNWNERLSGLSGGKDVVKLTGETTADLRLLEKGDLILATPSQWDSLSRQWQRR
KNVQSVSLLIADELHMLGGSNGHVYEIVVSRMQAMATQLESKLRIVGLSVSLSNARDIGE
WIGANKHTIYNFSPAIRAVPLELKIQSFTIPHFPSLMMAMARPTYSAITQMSPDKPAMVF
VPNRKQARNSAADLFNACIADDDEDRFLNVDLSEIQPILEKINEQALATSLSHGIGYFHE
ALNSFDKRAVQHLFKVGAIQVMIVSRDSCWEIDSSAHLVVVQGTQFYEGREHRYVDYPIS
DILQMFGKAGRVGLDKSAKGVLMLPAVKREYYKKFLNEALPIESYLHDYLHDAFVAEISA
KTIESTQEAVDWSTYTYFYRRLLANPSYYNLHDTSHEGLSAHLSDMVEQTLKELTDANLI
EHDEDEDAITPLNPCMIAAYYNISFITMQTLMMSLNGRTSLKGVLEIITAATEFEDIQIR
RHEDHILQRIYDRVPFKMQEPNFETPHFKAFVLLQAHFSRMQLPIDLAKDQETVLRKVLT
ILSASVDVLSSEAHLNAMSAMELSQMVVQAMWQKDSPLKQIPHFDADTIKAAQKFGINDV
DDFINAMDEDENPDYKQLISALNVDQRQLADIANFTNNFYPNVELEHQLVDPENIASNTP
TQLKVRVTRNLEEDEEPKTEVHAPFYPADKTESWWLVLGDQKERTLLAIKKVPILRKLET
VLEFTLEKPGSHELTLYLVSDSYLGVDQAPTFQVEAAEGMEEDSEEEEDDEE
NT seq
6639 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatcaaaacaacctcgcgcagttcaaatatgcggccatgtcgaatttggtc
ctgcaggccgacagacgatttacgtcgcgccgaccggacgagcacactggtgaccccgag
tcgctcgcaggccgcatcaacatccgcgacatgggcgcgcgtactgcgcgtgacagtgca
agtgcgcaaactaagaagctcaaggtgcccggtgttgagcgaggcaatctcggggagggt
ggcgatgtcctggaaagagagcaacgcaagaggaaacgggacgatggcacaagcgctttt
ggagctattgctaccgccgacctgaatatcgaaggccttacatacaagccacggacacct
gctactcgccaaactttcgaactcattacgaccattgtgagccgagctctcggcgatgtc
gatcctgcgaccacgcgaagtgcggccgatcaagttctggaatacctcaaggatgactct
atgaaggactttgacaagaagaaggaggtggacgatcttttgggtacttctatgggcgca
aaggagttcaacgagcttgtgaaccttggcaagaagattacggattacgacgcgcaagat
gacgaggaaggaggcgatgaggagatggcggatggagatggcgcagacaatggcgacaac
cagggtgtagctgtcgtcttcgatgatgaagaggaggacgaagacggccctcagactttc
gaagtgcgtgatgccgacagttcggatgaagaggatgaggcagaagcgccgatagaacaa
atcggaggcgacgattcaaaggacgcaggttttgcggacaccgaggagacgataatacag
ggcgacacggccatttcggatcgcaaaaacggcgcagaccagctcattcccgcacacgag
atcgacgcatactggttacaacggcagattggacagatctacgaggatgcgcatatacag
caagagaagacacaggaagcgctcaagtttcttgcgggagtctcggaagacggtgaagag
aaggagctgcgtgagattgagaacgacctcatggatctctttgattatgaacatcacgag
ctggtcgccaaacttgttctcaaccgtgatagggtcgtttgggttacaaggtggcgacgc
gccgcggaagacaatgacgagcgaacggctgttgagcgggagatgaaggctgccggccag
caacaaatcctgcaagagctgcgcgcacgagaaacgggcatcaaggcagaagagggtgct
ggcacaggaaagatgaagttcaacctcaaagacatcagtcttcccgaggtgtcgaacgac
gtcgaaatggccgacgccaaaccagagggcattgttggcggtctacaaccatcaagccga
cttgtgaacttggacaacatcgtgtttgatcaaggtaaccatctcatgacgaatgcgagc
gtcaagctgcctcaaggttcaacaagacgtcaattcaagggatatgaagagattcacgtc
cctgcaccaaaggcgaagcgtgatcccaacgaaccaccactgatgccaacctccgaactc
ccagactgggcacgccctggtttcggtaactcgaagtcacttaaccgtatccagacaaag
tgtttcccgaccgccttcaatgacgatggcaacatgctgatttgtgctcccactggttcc
ggaaagaccaacgttgccatgctgaccatgttgcgagagattggcaaacaccgcaacccc
acgacaggagaaatcgcccttgatgacttcaagatcatctacattgctccgctcaaggct
ttggttgcggaacaggtcggtaactttggcaagcgtcttgaaccatatggtatcaaggtt
tctgagcttactggtgaccgtcaacttaccaagcagcaaatcgcagagacccagatcatt
gtcaccactcctgagaagtacgacgtcattactcgtaaggccaccgatacaagttacatt
aatctcgtccgcctcatctgtattgacgaaatccatcttcttcacgatgatcgtggtcca
gtcattgagagcattgtcagcaggactcttcggcatagcgagcagactggtgatcacgta
cgcattgtaggtttgagtgctactcttcccaactaccgcgatgttgcgagtttccttcgt
gtagatcccgacaagggactgttccatttcgacggtaccttcaggccgtgtcccctgaag
caagagttcatcggtgttacagacaagaaggctatcaagcaactgaagaccatgaacgat
gtctgctacactaaagttctcgaacaagtcggcgagcaccgcaaccagatgcttatcttt
gtacattcgcgaaaggaaactgcaaagactgccaagtatattcgtgataaggcccttgaa
gaggagactataggcaagattctccgatcagacgctgctagtcgtgaaattctaagggaa
gagtccgagtcgatacagaacgccgatctcaaggatgtcatgccctatggatttggtatc
catcacgctggaatgtcgcgagcggaccgtacctctgtagaagatctctttgccgatggt
tcaatccaagtcttggtgtgtacagcaaccttggcttggggtgtcaacttgccagcgcat
acagtcatcatcaagggaacacagatctactctcccgagaagggtagctgggttgaactg
agtccacaagatgttctgcaaatgcttggtcgtgctggtcgacctcaatacgatacatat
ggagagggtatcatcatcactacacagtctgagattcagtactacctgtcactgctcaac
cagcagttgcctatcgagtcgcagctcatcagtaaacttgcagacaaccttaatgccgag
attgttctgggcaacgtccggagcagagatgaagctgtagactggcttggctacacatac
ctctttgttcgaatgcttcggtcgccagctttgtaccgggtaggccccgagtacgagaac
gatacggttttggagcaaagacgagtagatcttatccacgcagctgcgcacgttcttgaa
aagtgcagtcttatcaagtacgacaggaagactggagctcttaaccccaccgaacttgga
agaattgcctcccactactacatcacccataactccatggctacttacaacatgcacgtt
cagcctggtatcagtgcgattgagcttttccgagtgtttgcactgagcgaggagttcaag
tacattcccgttcgtcaagacgagaagttggagcttgctaagctgcttggaaaagttccc
attcctgtcaaggagggtgtggaagagcctcaagccaagatcaatgttcttctccaggct
tacatctctcgtctcaagctcgaaggtttggcgctcatggcagatttggtctacgttaca
cagtcggctggacgtattcttcgcgcaatctttgaaatttgtctcaagaagggttggtcg
caagttgccaagttggctcttgacatgtgcaagatggccgagaagcgcatgtggcctacc
atgactcctctgcgacagttccccacttgccccagggacattgtgcagaaagcagagcgc
attgatgtcagctggtcgagctactttggccttgatccacccagcatgggcgagttgctt
ggtatgcccaaggcaggcaggctcgtctgtggtctggttgagaagttcccccgactccag
attgaagcaacaccacgtccagtgaccagatcattgcttcgtttggagctcaccattcga
ccagactttgtttgggataatgagcttcacggaacgtctgaagccttttggattctggtt
gaagactgcgatggtgaacaagttctgttccacgataccttcattctccgtcgtgattat
gctgatggcgacgtcaatgagcatctgctcgagatcacagtacccattgacgagccaatg
ccgccaaactatttcatcacagtcctctctgatcgatggatggcttccgagaccaagctc
gctgtctcattccagaagctcatcctgccagcgaaattccctgctcatacgcctgtcctg
gacttgcagccactgcctgtctctgctctgaagaggaaggaatatatgggcttgtatgag
aacatcggtcgcttcaacaaggttcagacacaaactttcaacaccctctacaccacagac
gacaacgcactcattggtgcttcgactggtgttggaaagactatctgtgctgaattcgcc
attttgcgacactggggctccggtgacgaaggccgtatcgtttacctagcgccgttccag
gaacttgttgacaatcagtacaagaactggaatgagcggttgtcgggtctctctggaggt
aaggatgttgtcaagcttactggcgaaactacagcagatctgcgactccttgagaagggt
gacctcattttggctacaccttctcagtgggactccctctcccgtcaatggcagcgccga
aagaacgtgcagtctgtgtcgttgttaatcgctgatgaattgcacatgcttggcggatcc
aacggtcatgtgtacgagattgttgtctctcgtatgcaagctatggcgactcagctcgag
tcaaagctgcgtattgtcggactgagcgtctctttatcaaatgcacgagacattggtgag
tggataggcgcaaacaagcacaccatctacaacttcagtccagctattcgagctgtaccg
ctcgagctcaagatccagtcattcaccattccccacttcccatctctgatgatggccatg
gcgagaccgacatactctgccatcacgcaaatgtcacccgataagccagctatggtcttc
gttccgaacaggaagcaagcccgcaactctgctgctgacctcttcaacgcgtgcattgcg
gatgatgatgaagaccgtttcctcaatgttgacctgtcggagatccaacccatcctcgag
aagatcaatgagcaagcgcttgcaacttcgctttctcatggtattggttacttccatgag
gctctcaactcgttcgacaagcgggctgtccagcacctgttcaaggtcggtgctatccag
gtaatgattgtttcgcgagactcttgctgggagattgatagcagtgcccatcttgttgtc
gtccaaggtacccagttctacgagggacgtgaacacagatatgtcgactaccccatcagc
gatattctgcagatgtttggcaaggctggcagagttggactggacaagtcagccaagggt
gtgctcatgctgcctgcggtaaagcgcgagtactacaagaagttcttgaacgaggcgctg
cccattgagagttacctccatgactacctccacgatgcatttgtcgcggaaatcagcgca
aagacaatcgagtccacacaggaagccgttgactggtcgacatacacatacttctaccgc
cgcctactcgccaaccctagctactacaaccttcacgacacttctcatgaaggactcagt
gcgcacttgtccgacatggtcgagcagaccctcaaggagctgacggatgccaacctcatt
gagcatgacgaggacgaggatgctatcacaccactcaacccatgcatgattgcagcgtac
tacaacatttcgttcattacgatgcagacactcatgatgtcgctgaatggtagaacgagc
ttgaagggcgtcctggagatcatcactgctgccacagagtttgaggatatccagatccga
cgacacgaagaccacatcctccagcgcatctacgaccgtgttccattcaagatgcaagag
ccaaacttcgagacgccacacttcaaggcctttgtccttctccaagctcacttctcgcgc
atgcagctgcctattgacctggccaaggaccaggagactgtcttgcgaaaggttcttacc
attctcagcgccagtgtcgacgtcctctcctcggaagcacatctcaacgccatgtccgcc
atggagctctcccagatggtcgtccaagcaatgtggcaaaaggactctcccctcaagcaa
atcccacactttgacgccgacaccatcaaggccgcgcaaaaattcggcatcaacgacgtc
gacgacttcatcaatgccatggacgaagacgaaaacccagactacaagcaactcatctcc
gccctcaacgtcgaccaacgccagctcgctgacattgcaaacttcacaaacaacttctac
cccaacgtcgagctcgagcaccaactcgttgaccccgaaaacatcgcttccaacacgcct
acccaactcaaagtccgcgtcacgcgcaacctcgaagaagacgaggagcccaagaccgaa
gtccacgctccgttttaccctgctgataagacggagagctggtggcttgtgcttggagac
cagaaggagcgcacgctgcttgctattaagaaagtacctatcctacgcaagctcgagacg
gtgctcgagtttacgctcgagaagccgggtagccatgaattgacgctttaccttgtaagt
gacagttatctgggtgttgatcaggcgcctacattccaagttgaggctgcggaagggatg
gaggaagatagtgaggaggaagaggatgatgaagagtag
DBGET
integrated database retrieval system
