KEGG   Bipolaris zeicola: COCCADRAFT_41504
Entry
COCCADRAFT_41504  CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
bze  Bipolaris zeicola
Pathway
bze03018  RNA degradation
bze03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCCADRAFT_41504
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCCADRAFT_41504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_41504
   03041 Spliceosome [BR:bze03041]
    COCCADRAFT_41504
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCCADRAFT_41504
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCCADRAFT_41504
Spliceosome [BR:bze03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    COCCADRAFT_41504
SSDB
Motif
Pfam: LSM FoP_duplication
Other DBs
NCBI-GeneID: 19149490
NCBI-ProteinID: XP_007717812
JGI: 41504
UniProt: W6XYT8
LinkDB
Position
Unknown
AA seq 138 aa
MSERGAFRGRGGGRGGDRGGRGGGRGGGGGGGGGGGGAHAGGQTERPKKENILDLSKYMD
KQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTDEDGNIRYRKLGLIVARGTLLVVI
SPVDGSEEIANPFLQEEE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctgagcgaggcgcttttcgcggccgaggcggtggcagaggaggcgaccgcggtgga
aggggcggcggtcgtggaggaggtggaggaggtggaggcggcggaggaggagctcacgct
ggcggccagacggagcgccccaagaaggaaaacattctcgacttgagcaagtacatggac
aagcaaattactgtcaaattcagtggaggccgagaagtcattggcacattaaaaggctac
gaccagcttatgaaccttgtcctcgacgaggtcaaagaggctcttacagacgaggatggc
aacatccgataccgcaaactcggcctcatcgtcgcacgcggtaccctgctcgtcgtcatc
tcccccgtggacggaagcgaagaaatcgccaaccctttcttgcaggaagaagagtga

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