Bipolaris zeicola: COCCADRAFT_5162
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Entry
COCCADRAFT_5162 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K14311
nuclear pore complex protein Nup188
Organism
bze
Bipolaris zeicola
Pathway
bze03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCCADRAFT_5162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_5162
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
COCCADRAFT_5162
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_C
Nup188_N-subdom_III
Nup188_SH3-like
Nup188_N
Motif
Other DBs
NCBI-GeneID:
19150024
NCBI-ProteinID:
XP_007712423
JGI:
5162
UniProt:
W6Y720
LinkDB
All DBs
Position
Unknown
AA seq
1877 aa
AA seq
DB search
MAPLQSPDFDLAKCLNGEQQLVTWNVAYRALCDPVTASKSDALRAFLSAKENIDTLTHPW
RPFPDPSSQEKSKFESKTAPISVTPAQSDHYDVEEIKEDSLWLAKEAQISEYAALQLVVQ
EWQGRPAAQLLSGLTEEEALNVQDAAGIANLGASTFVPNSSLLATPLASKTAHLDTKNQR
RLHILDIYHSTCASIIRISQLLVSWGCASNLRNQTIYGTEYLSIGAGWIEELGQTIATAQ
DGPSGGKALDECLKAFSKRCDSLDTGYAWNVDDSILEAASEKWVVAQTTELLHILHLALV
HADLVAKEFLPAATIEDWLKAFSFRGFFREFPAVTARQEPLIPVIQLLTSLMSLTILKVD
KIMDDLESGDCNTWHSSSYILNTNVVETITTIFGEAKVLGASPATPPMFAWALVTWKLTS
RASYEEQERDRLLESSNGAGNTESEPSSLEEAALVITKLENHELFDGKMPYEDLATVSSA
AGVLAIINQLVETSLPAFGTSIDRISQDRVRLLFLHVVRAAVGSEIVAYSPDLIVTTYTI
LAGDNTFRRWDNGQFARHADPIVAYFLEDEYILRPMLLNEARLRYPYEMTPFLKFCSALT
RGDKTMQNGMPSFVDKLANHNRLMQRLPDGFHDYQLTREEENANWVELTADLPLFSSAGT
STFGAQRRLMASGTSRHAHGFSTIPAGTEGIIVDDNSQPYVAVWHHQHSTLSYLVELLST
YPVGSSKVETATQQRASRENVVEVIGLFADLIHSSLHSSEGICSPELLEAIGIGAEGSVD
TVNIVFAIFEEELLYLCQEPSNDVSLELLVNCTHFLEALVIVSPQRVWPWLARSRLLEGD
GNGSLATILISTEMVLGRYDFLLGCIRLYKGLVKDSVDRSVSRKVPTKALSRFNASAPAD
SGTSDKIMSTILFTFGRTLASIYENSLNWKYSQPDHRPEINTAICEVFTTILSLAYSVDD
APKLSTKLTKSIAPIAEYLTQLYLAGSDTNLPTNPLMTYLIIGISPNDNTLLTTSGALWT
QQTQSTLAFADLLVRIAMLLNKPWTHLEQQLFKATPLLARLYATSDKWKSQVVLLLEALV
RGAVRVTTQEDSEMADKKTEQREPPSLLGHLGPRTAKNFLSVLSRLDEPLKIVDIQRNVW
NLLSAVVTCKQQWFSLYLLTGNTPRETIRSKRNVAQDSRNKALLTRAFDALSSMTLPEKE
PAGVSWPLFTAMLEFVSSAQNNWSWAMGDLRQRKDLIQKLLAFLKWMAKQSKQPRISSNE
ETLERSFQNKFASLACEVIAMYLHSSRQVGDITVLKDIVPSLTYLEDTALDLPSYSTSLH
GYLKQNLEQQYPGVSLANLKRTTLYPETFGRAFFYDIDLAQQLLGFNSKWAGPREGTGFA
SEVEKANYNLGLVESQVLLLHGWKLLALELGQVVAKDERIVKVLIGVVQKCMTANTQSNL
PEALFGQLMVVRADLAFALLKKLVEAKVRTTEARQLLSPIWSAIRASTPDFDSVFSSDSV
HYYRSLLRILYLALHFHLIEDTDQSNDASFRSSFRGTMPSSHNSYTEPISTQLLEILTDT
VAKGFRSLATQLHAEPLSVLPSDFALLTALLQRIIAIPEMSKWQQQAALLFANNNTVRYA
TSLFSWADRLAISHNGVDDPIYGELSILFLLSLSSIQALAETMAVEGILSQLNTANIMNY
YRRVNGTGPFDSPVRMYSVWTKGILPLCLNLLLSVGPPIAGEISSFLNQFPEQLARSASS
INSSNSSSRYAANSNKITLSVASEIHSLALIAAILENVRKQGPKLGIQANEVALLEWEKD
AVKEDVESWLSRKSALRERLVAVDEKELDMLNRTKGKGEDAPSELEERVIAELEDARTCM
VGGANGGGSGNGDSTRK
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggccccccttcaatcgcccgacttcgacctggcaaagtgcctcaacggcgagcagcag
ctggtcacctggaacgtcgcataccgcgccctctgtgaccctgtaaccgcgtccaaaagt
gacgccctacgcgccttcctctccgccaaagaaaacatcgacaccctcacccacccatgg
cggcccttcccagacccgtcgtcgcaggaaaaatcaaagtttgaatccaagacagcgcct
atcagcgtcactcccgcccagagcgatcactatgatgtagaggagatcaaagaagacagc
ctttggctagccaaggaagcgcaaatctcggaatacgcagccttgcagcttgttgtgcag
gaatggcagggtcgccctgccgcccagctgctgagtggtctgacggaagaggaggcgctc
aatgtgcaagacgcggccggaattgccaacctaggcgcctcgacctttgtcccaaactcg
tccctcctcgcaacaccgctcgcttctaagaccgcccacctcgatacaaagaaccagcgc
cgtctgcacatcctcgacatctaccactcgacctgtgcctccatcattcgcataagccag
cttctggtctcgtggggctgcgcatccaatctgcgcaatcagaccatatatggcaccgaa
tacctcagcattggcgccggatggattgaagagctcggccagactatcgcgacagcacag
gacggaccctcaggtggaaaggcactagacgaatgtctcaaggccttctcaaagagatgt
gattccttggataccggctatgcgtggaatgtggacgattcaatactcgaagcagcatcc
gagaagtgggtcgttgcccaaaccaccgagttgctacacattctccacttggcactagta
catgccgatttggttgcaaaagaattccttccggcggccacgattgaagactggctcaaa
gcctttagtttccgcggcttctttcgcgaatttcccgcagtcaccgctcgccaggagcct
cttatccccgtcattcaactcttgacttcactcatgtccctgactatcttgaaggttgac
aagattatggacgatctcgaatctggcgattgcaacacctggcattcttcgtcgtacatc
ttaaacaccaatgttgtggagaccatcacgaccatattcggagaggccaaggtattgggt
gccagtcctgccacaccacccatgtttgcctgggccctcgtaacgtggaaacttacaagc
cgtgcgagctacgaggagcaagaacgtgaccgtctcctcgaatcatcaaatggcgccgga
aacaccgaatccgagccctcttcccttgaggaggctgctttggtaattacaaaactcgag
aaccacgagctattcgacggcaagatgccatacgaagacctggctacagtcagctcagca
gcaggtgtactagccattatcaaccaacttgtcgaaaccagtctacctgcgtttggcacg
tccattgatcggatatctcaggacagagttcgattgttgttccttcacgtagttcgcgct
gctgttgggagtgagatcgtcgcatatagtccagatctcattgtcacaacatacaccatt
ctggctggcgataacacgtttcgccggtgggacaatggtcaatttgcccgacacgccgat
ccgattgtggcatacttccttgaggacgaatacatcctgaggccaatgttgctcaacgaa
gcccgcttgcgatatccctatgagatgacaccatttctgaaattctgcagcgcattgact
cgtggggacaagacgatgcagaatggcatgccttcgtttgttgataagcttgcgaatcac
aatcgcttgatgcaacgtcttccagatggattccatgactatcaactaacgcgtgaagag
gagaatgccaactgggtagaacttaccgctgatctccccttgttttcttctgcaggcaca
tccacttttggtgcccagcgtcgcttgatggcctcgggcacttcaagacacgcacatggc
ttctctactattccggctggcacagagggtatcatagttgatgacaactcacagccatac
gtagcagtctggcatcaccaacattctactttatcgtaccttgttgaacttctctcgaca
tatcccgttggaagcagcaaagtcgagactgctacccagcaacgcgcgtctcgtgagaat
gttgtagaagtcattggccttttcgctgacctgatccactcgtccttgcactcgtccgag
ggcatctgctcacccgagcttctagaggcaattggcatcggagctgagggcagcgtggac
actgttaacattgtgttcgcaattttcgaagaagaactcttgtatctctgtcaggaacca
agcaacgatgtgtccttggagctattggtcaactgcactcatttcttggaagctttggtc
attgtgtcccctcaaagagtatggccgtggctcgccaggagtagattattagagggcgat
ggcaacggaagcttggcaaccatcctaatcagcactgagatggttcttggacgatacgac
ttccttcttggatgtattcggctctacaagggtcttgtcaaggattctgttgatcgatcc
gtgtcccgcaaagtccctacaaaggcactcagtcggttcaatgcatcggctcccgctgac
agcggtacttcggacaagatcatgagcaccattctgttcacttttggtcgcactcttgcc
agtatatatgagaactcgctcaactggaagtactcgcagccggaccaccgccccgaaatc
aacactgccatttgcgaagtctttaccacaatcttgagtcttgcatacagcgtagatgat
gcgccaaagctgtctactaagctcacgaaatcaattgcacccatcgccgaatatctcact
caactctatcttgctggttccgacaccaaccttcctacaaacccgctcatgacatatttg
atcatcgggatcagccccaacgacaacaccttgcttacgacttcaggtgcactatggact
caacagacccaaagcaccttagcatttgccgacctacttgtccgaattgccatgctactt
aacaaaccctggacccatctggagcaacaactcttcaaagcgacaccattactcgcccga
ctgtacgccacgagtgacaagtggaagtcccaggttgtgctgttgttggaagctctggtc
cgtggcgcggtccgtgttaccacccaagaagattcagagatggccgacaagaagactgag
cagcgagaaccgccttcgttactaggccatctggggccacgaactgcgaagaacttcctc
agtgtgctttctcgactagatgagccactaaagatcgtggacatccaacggaacgtgtgg
aacttactttcagctgtagtaacgtgcaagcagcagtggttctctctgtatttgcttacc
ggaaacactccacgagaaacaattcgaagcaaaagaaacgtggcgcaagattcaaggaac
aaagccctgctcacgcgagctttcgatgcgttgtctagtatgactctcccagaaaaggaa
cctgctggcgtttcatggccgctatttacagccatgctcgagttcgtttcttcagcgcaa
aacaactggtcatgggcaatgggcgatttacggcagcgtaaagacttgattcaaaagttg
ctcgcattcctcaaatggatggcaaaacagtctaaacaaccgcgaattagcagtaatgag
gagacactagagcgatcgttccaaaacaagttcgcatctctcgcctgcgaagtcattgcc
atgtacctccacagctcgcgacaggtcggtgacattaccgtactgaaagacatcgttccc
agcttgacgtacttggaagatactgctttggatctgccatcttacagtacgtcgctgcac
ggatatttgaagcagaacctggagcaacagtaccctggtgtctctctagcgaacctcaag
cggaccactttataccctgagaccttcggacgggcattcttctatgacattgatctcgct
cagcaacttctgggtttcaacagcaagtgggctggccctagggagggcacgggtttcgca
tctgaagttgagaaggcaaactacaacctaggactcgtagaatcccaagtcttgttactt
cacggctggaaactgttggctctggagcttggtcaggtggtagcgaaggacgagcgaatc
gtcaaggtcctcattggtgttgttcaaaagtgcatgactgccaatacccagtcgaacctc
ccggaagcattgtttggtcagctcatggtcgtgcgagcggatctggcatttgctttactg
aagaagctcgtagaggccaaggttcgaactacagaagcgcgtcaattgcttagcccaata
tggagtgccattcgcgcctctactccggacttcgatagtgtcttctccagcgactcggtc
cattactaccggtccttgttacgcatcctctacctcgctcttcacttccatctgattgag
gataccgaccagtccaacgatgcctctttccgctcaagcttccgtggcactatgccgagc
agtcacaatagctacactgagcccatctccacacagcttctcgaaattctgaccgataca
gtagccaaggggttccgtagcttggccacacagctacacgcggaacccttgtctgtctta
ccatcagactttgctctcctaactgcgctgctacagcgtatcatcgccataccagaaatg
tccaagtggcagcaacaagcagcgcttctctttgcaaataacaacacagtacgctatgcc
accagccttttctcatgggccgatcgcctcgcaatatcacacaatggcgtggacgatcct
atttacggcgagctaagcatcctcttcttgctctcgctatccagcatccaagctctagcc
gagaccatggctgtcgaaggtatcctcagccaactcaacacggcaaacattatgaactac
taccgtcgcgtaaacggcaccggtccctttgacagcccggttcgcatgtactctgtctgg
accaagggaatccttcccctctgcctcaacctcctcttatccgtcgggcctccgattgct
ggcgagatttcctcattcctcaaccaatttcctgaacaattggcccgctcggcatcaagc
atcaactcatcgaattcatcgtctcgttacgcagccaacagcaacaagatcacgctttct
gtggcatctgaaatccacagtttggcccttatcgccgcgatcttagagaacgtgcgcaaa
caagggcctaagctgggtattcaagccaacgaagtggcgcttctggaatgggaaaaggac
gctgttaaagaggatgtggagagttggttatcgcgtaagagtgcgctcagagaacgtctt
gttgcggttgatgagaaggagttggacatgctgaatcgcaccaagggcaagggagaggat
gcgccgagtgagttggaagagagagttatagctgagctcgaggatgcgaggacatgtatg
gttgggggtgcgaacggcggtgggagtggtaatggggatagtacaaggaagtaa
DBGET
integrated database retrieval system
