Bipolaris zeicola: COCCADRAFT_5476
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Entry
COCCADRAFT_5476 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
bze
Bipolaris zeicola
Pathway
bze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCCADRAFT_5476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_5476
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
COCCADRAFT_5476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_S1
Rrp44_CSD1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
Dis3l2_C_term
DUF7923
DIP2116-like_N
SIN1
Motif
Other DBs
NCBI-GeneID:
19150113
NCBI-ProteinID:
XP_007712788
JGI:
5476
UniProt:
W6YBJ0
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MEYFSLKRSTAADRGQSNLSSKVYVRSTKSGKVQKIVRELYLRQDIPCSSNLCRACLEIA
PADYSKKTSPFVLSDTPAGSKHFPNGQYLVPDTNALLTGMDLFEVETAFHDVIVLQTVLE
EVKNRSLPLYHRLISLTKNEGKRFYVFFNEFRQETNVVREPGETINDRNDRAVRKAVQWY
NQHITDAVKAQSKTQTRIPTVVMITDDRDNLRKAKNEDVPGLTLSDFVSGLENSDELLDM
ISAAQEQREVRSKKAEVFYSEHYSVSKMMTGVKAGTLHQGIFNVSPYNYLEGSVHVPAFD
KSLLILGRENSNRAVSGDVVVVEVLPQDQWKAPSTKIIEEETVNKNDNAEAEEGENVIPV
RERRALQEEVKRVHGQSTEGRPQPTARVVGIIKRNWRQYVGHIDRDSVRSSSKSSRQQQT
VFLVPMDKRIPKIRIRTRQAGELLGQRVLATIDSWEKDSRYPVGHFVRSLGELESKGAET
EALLLEWDVQYKPFPKTVLDCLPAEGHDWKVPANMDDPGWRGRKDLRDLLVCSIDPVGCV
DIDDALHAHKLPNGNYQVGVHIADVSHFVKPNNAMDKEASQRGTTVYLVDKRIDMLPMLL
GTDLCSLKPYVERYAFSVIWEMTEDADIVASHFTKSVIRSREAFSYEQAQIRIDDQSQTD
DLTKGMRTLLMLSKKLKQKRMDAGALNLSSPEVKVRTESETSDPADVQTKKHLDTNSLVE
EFMLLANTSVAAKNYEAFPQTALLRRHAAPPKTNFEELDNQLKVKKGMEIKTDSSKALAD
SLDKCVDPNNPFFNTLVRIMATRCMMSAEYFCAGTQAYPEFRHYGLASEIYTHFTSPIRR
YADLEAHRQLAAAIEYEQLDASLQSKAKLEAVCKNINVRHRNAQMAGRASIEYYVGQALK
GKDINEEGFIMKIFSNGFVVFVPRFGIESLIRLRDLATPEPEADFDAENYVLNIKSDVKR
SVELFEKVTVRITDELEESTGKRKVKLSLV
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggagtacttcagtctcaagcgctccacggctgccgaccgtggccaatcaaatctctcc
agcaaggtctacgtgcgatcaacaaaaagcggcaaagtccaaaaaattgtcagagagctc
tatctacgacaggacattccctgttcatcgaacctctgcagagcatgtctcgaaattgcg
cccgctgactactccaagaagacatctcctttcgtcctgtccgacacaccagcaggatca
aagcattttccaaatggccaatatctagttccagacaccaatgccctcctcacgggcatg
gacctgtttgaagtcgaaactgcctttcatgatgtcattgtgctgcaaaccgtgctcgag
gaggttaagaaccgctcgttgccgctttaccaccgcttgatatctctgactaagaatgag
ggcaagcgcttctacgtctttttcaacgagttcaggcaagagacaaatgtagtccgagag
cccggcgagacgatcaatgaccgcaatgaccgggcagtgcgcaaagctgttcaatggtac
aaccagcacatcaccgacgctgtcaaagcacaaagcaagacgcagactcgcatccccacc
gtcgtcatgattactgatgacagggacaatctgcgcaaagccaaaaacgaggatgtgcct
ggtctgacattatccgactttgtctccggcttggaaaactctgatgaacttctcgacatg
attagtgctgcgcaagaacagcgcgaagtcagatcaaaaaaggcagaagtcttctactcg
gagcactactccgtctcaaaaatgatgacgggggtaaaagccggaactttacaccagggg
atcttcaacgtttcaccatacaactacctcgaaggctctgtgcatgtacctgctttcgac
aagtcactcctcatcttaggacgtgaaaacagcaatcgtgcagtctctggtgatgttgtc
gtcgtcgaagtactgcctcaagatcaatggaaagcaccgtctacaaaaattatcgaagag
gagacagtgaacaagaacgacaacgctgaggcagaagagggggagaacgttattcccgtg
agggagcgacgagcattacaagaggaggtaaaacgggtccacggtcagagcacagaagga
cggccgcagccgacagcacgggttgtgggcatcatcaagcgtaactggcggcaatacgtg
ggccatatcgaccgcgactcggtccgttcttcatcaaaatcaagtagacagcaacaaact
gtcttcctcgtccctatggacaagcgcatacccaagatccgtatacgaacacggcaggct
ggagagctccttggtcagcgcgttctggcaaccatcgactcctgggaaaaagattcgcgg
tatccggttggccattttgttcgatcacttggtgaacttgaatcaaagggcgcagaaact
gaggctttactactcgagtgggacgtgcaatacaagccattccccaagacagtcttggat
tgtttacctgcggaaggccacgactggaaagtacccgctaacatggatgatccgggttgg
agagggcgcaaggatcttcgcgatcttctagtctgctctatcgatcctgtcggctgtgtc
gatattgatgatgctctccacgcccacaaactgccaaacggtaactaccaggtcggtgtt
cacatcgccgatgtatcacactttgtcaagccgaataacgcaatggacaaagaagccagt
cagcgtggaacgacggtatatctggtcgataaacgcatagacatgcttcccatgcttctt
ggaacagatctgtgctcgttgaaaccatacgttgagcgatacgccttctctgtgatttgg
gaaatgacagaggacgctgatattgttgcttctcacttcacaaagtccgtcattcgctca
agggaggcttttagctacgaacaagctcagattcgaatagatgaccagtcacaaaccgac
gacctaacaaagggcatgcggacgctgctcatgctctcgaagaagttgaagcaaaagcga
atggatgcaggagcactgaatctttcctcgccagaggtcaaggtccgaacggaatccgag
acgtcagacccagcagacgtgcagaccaagaagcatcttgacaccaactcgctcgtagaa
gagttcatgttgctcgccaacacaagtgtcgccgcgaagaactatgaggcctttccacaa
acagctctgttgcgccgtcacgcagccccgcctaaaacaaactttgaggagcttgacaac
cagctcaaggtgaagaagggaatggaaatcaagacggacagttccaaggctctggccgac
tcgctcgacaagtgtgttgaccctaacaaccccttcttcaacactctagtcagaatcatg
gctacacgctgcatgatgtccgcggagtacttttgcgcaggtacacaagcatatccagag
tttcgacattacggtctggccagcgaaatttacacccacttcacatctcctattcgtcgt
tatgctgatctcgaagcgcatcgtcagcttgctgctgccattgaatacgagcaattagac
gccagtttgcaatcaaaagccaaactcgaagccgtatgcaaaaacatcaatgttcgtcac
cgcaatgcccaaatggctggccgagcttcgatcgagtactacgtcggccaggcgctcaag
ggcaaggatatcaacgaggaagggttcatcatgaagattttttccaatggctttgtggtg
tttgtgccgcgctttggtattgagagccttatccgcttgagggatcttgcgactccagag
ccagaggccgacttcgatgctgaaaactatgtactcaatatcaagagcgatgtcaagagg
agcgttgaattgtttgagaaggtcactgtcaggattacggatgagcttgaagagagcact
ggcaagaggaaggtcaagttgagtctggtctga
DBGET
integrated database retrieval system
