Bipolaris zeicola: COCCADRAFT_6289
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Entry
COCCADRAFT_6289 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bze
Bipolaris zeicola
Pathway
bze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCCADRAFT_6289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_6289
03041 Spliceosome [BR:
bze03041
]
COCCADRAFT_6289
03009 Ribosome biogenesis [BR:
bze03009
]
COCCADRAFT_6289
03016 Transfer RNA biogenesis [BR:
bze03016
]
COCCADRAFT_6289
Enzymes [BR:
bze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCCADRAFT_6289
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
COCCADRAFT_6289
Spliceosome [BR:
bze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
COCCADRAFT_6289
Complex C
U4/U6.U5 tri-SnRNP related factors
COCCADRAFT_6289
Ribosome biogenesis [BR:
bze03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCCADRAFT_6289
Transfer RNA biogenesis [BR:
bze03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
COCCADRAFT_6289
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
eIF3_p135
ATPase_2
nSTAND3
ABC1K3_C
Motif
Other DBs
NCBI-GeneID:
19150367
NCBI-ProteinID:
XP_007713769
JGI:
6289
UniProt:
W6Y2S5
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDDDMFEVFEGGPSKDAAPRKTKKRQANGDVKSPVPVEDATMSDAPAEAQGGTNENSAAE
TLKKRQKRDAEPEPIVTDDFETEQSREVAAAAGLQAQTQDGEAVVLSHQVRHQVALPPDY
DYVPISEHKPPTEPARTWPFALDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQC
LKNNQRVIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYR
GSEIMREVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNSMQFAEWITK
THSQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGVFREENFQKAMSSIADKAGTDA
KDFMAKRKGKGKDKKTNTGGNREQTDIYKIVKMIMVKSYNPVIVFSFSKRECENYALAMS
SLAFNDESEKAMVTKVFNSAIEMLSEEDRQLPQIQNILPLLRRGVGVHHSGLLPILKETI
EILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWVTPSEFIQMSGRAGRR
GLDDRGIVIMMIDEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLER
CFYQFQSTAGVSNLEKQLEELEQEKLNANIIDEAAVKDYYNLRQQLDTHTKDMRDVIMHP
NYCLPFLQGGRLVKVSYKDHDFGWGAVVAFAPRKANKGEVLPPQESYIVDVLLIVGSDNK
FAPVVNDGLPPGVRPPAPGDKGKMEVVPVVLNCIESIGHLRVFLPNDLKSTEQRNNVRKA
LNEVKKRFPDGIAILDPIENMNIKDESFKRLLRKIEVLESRLLSNPLHNSPRLPELYSQY
AKKIAIGEKIKNTKKEIANALSVIQLDELKSRKRVLRRLGFIDDADVVQLKARVACEIST
GDELVLSELLFNRFFNELTPEQCAACLSCFIFEEKTQEVPALKEELAKPYREIQQQARVI
AKMSQESKLTLNEEEYLKSFKYELMEVVFAWSKGATFSEICKMTDVYEGSLIRLFRRLEE
LLRQIAQAAKVMGSEELEQKFTAALELVRRDLVAAQSLYL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgacatgtttgaagttttcgagggcggcccctcaaaggacgctgcaccgcgc
aagaccaagaagcgccaggccaacggcgatgtcaagtcgccagtgcctgtcgaagatgct
accatgtcggatgcgcccgcagaagcacaaggtggcacaaacgaaaatagtgcagccgag
acactgaaaaaacggcagaagcgtgatgccgagcccgagcccatcgttaccgacgacttc
gagacggagcaatcgcgcgaggtcgctgctgctgctggactgcaggcacagacccaagac
ggagaggctgtagtactttcacatcaggtccgacaccaggtcgccttaccgccggactac
gactatgtacccatttctgagcacaaacctccgacggagccggcgcgcacatggcccttt
gcactggatcccttccaacaggtctctattgcctcgattcaacgcaacgagagtgtcctc
gtatcagcgcatacttcggccggaaagacggttgtggcagagtacgccattgcacaatgt
cttaagaacaatcagcgagtcatctacaccagtcccatcaaggcactcagcaaccagaaa
taccgagagttcatggcagagttcggcgacgtcggtctcatgacaggtgatgtcaccatc
aacccgaccgccacatgtttagtcatgacaacggagattctgcgatctatgttatacaga
ggttccgaaatcatgcgtgaagtagcttgggttgtgtttgacgaggtgcactaccttcgc
gacaagtcaagaggtgtcgtatgggaggagactatcattctgcttcccgacaaggtccgc
tacgtctttctgtccgccaccattcccaactcgatgcagtttgccgaatggatcaccaaa
acccatagccagccatgccacgtcgtctacaccgatttccgtccaaccccgctacaacac
tatttcttccctgctggcgccgatggtatacatttggtggttgacgagaagggcgtgttc
cgcgaagagaacttccaaaaggcgatgtcatccatcgccgacaaggctggaactgacgcg
aaggacttcatggccaagcgcaagggcaaaggcaaggacaaaaagaccaatacaggcggc
aacagagagcagacggacatttacaagatcgtcaagatgatcatggttaagagctacaat
cccgtcattgtgttcagcttcagtaagcgcgagtgtgaaaactacgcgctagccatgagc
tcccttgcgttcaatgacgaatccgagaaggccatggtcacgaaggtattcaacagcgcc
attgagatgctttcggaggaggaccggcaattacctcagatccagaacattcttcctctt
cttcggagaggcgttggcgttcatcattctggattacttcccattcttaaggaaaccatc
gaaatcctgttccaggagggcttgatcaaagtactcttcgcgacagagacgttctccatc
ggactcaacatgccagctaagactgttgtattcacaagtgtacgaaagtttgacggagta
tcccaaagatgggttacaccttcggaattcattcaaatgtctggtcgagccggtcgtcgt
ggtcttgacgatcgtggtattgtcatcatgatgatcgacgagcagatggagcccgctgta
gccaaggaaattgtgcgcggtcagcaggacaatttgaattcggctttccatcttggctac
aatatgattctgaacttaatgcgagtggaaggcatctctcccgagttcatgctggaaagg
tgcttctatcaattccagagcacagctggtgtctccaatttggaaaaacaacttgaggaa
ctcgaacaagaaaagctcaacgccaacatcattgacgaagccgccgtcaaggactattac
aacctgcgacagcaattggacactcacaccaaggatatgcgcgacgtaattatgcacccc
aactactgtctaccattcctgcagggtggccggctcgtcaaagttagctacaaagaccac
gattttggctggggtgcagttgtagcatttgcccctcgcaaagcaaacaagggcgaagtc
ctaccacctcaagagtcatatatcgtcgacgttctgctcatcgtcggcagtgacaacaag
tttgctcctgtagtgaacgatggcttaccccctggtgtccggccacctgcgcctggtgac
aagggcaagatggaagtggtacccgtagtcctcaactgcattgagtcaattggtcacctc
cgcgtgttcctgccaaatgatcttaagtcaacggaacagagaaataatgttcgcaaggca
ctcaacgaagtcaagaagcgtttcccagacggtattgccattttggatcctattgagaac
atgaatatcaaggatgaaagcttcaagagacttctaaggaaaatcgaagtactggagtct
cgtctcctgtctaatccccttcacaactcgcccaggttgcctgagctttatagccagtac
gcaaagaaaattgcaattggtgaaaagatcaagaacaccaaaaaggagatcgccaacgca
ttgtccgttattcagcttgatgaactgaagagcaggaagcgtgtgctgcgtcgactaggc
ttcatcgacgacgccgatgtcgtccagctgaaagcccgcgttgcctgcgaaatcagcacg
ggcgacgagctagttctcagtgaactgctcttcaaccgtttcttcaatgagctgacaccc
gagcaatgcgccgcctgtctgagttgtttcatctttgaggagaagacacaggaagtgcca
gcgctaaaagaagaactcgccaagccttaccgcgagatccagcagcaagccagagtcatc
gcaaagatgtcccaagagagcaagctgacgctcaacgaggaggaataccttaaatctttc
aaatacgagctcatggaggtcgtgtttgcctggtcaaagggtgctactttctcggagatt
tgcaaaatgaccgatgtctacgaaggtagtctgattcgccttttcaggcgactggaggag
ttgctccggcagatagcccaagccgccaaagttatgggcagtgaagagcttgagcaaaag
tttactgcagcactggagctcgtccgtcgggatcttgtcgcggcccaatctctttacctc
taa
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integrated database retrieval system
