Bipolaris zeicola: COCCADRAFT_84673
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Entry
COCCADRAFT_84673 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
bze
Bipolaris zeicola
Pathway
bze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCCADRAFT_84673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_84673
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCCADRAFT_84673
mRNA degradation factors
3'-5' decay
Pan complex
COCCADRAFT_84673
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
zf-CCCH
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
19151809
NCBI-ProteinID:
XP_007708004
JGI:
84673
UniProt:
W6Z293
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MSAGGPGDFREPSALYSFTSLMDSLSNGLAGSIHQKGSRLPTIQPASPPTKGAPHSSTSP
NQPAYFPIPRGHPHATVIASSGSSTTESFSEVTSSSSRDSLPNPQGRNAPTTPQKQARSN
RRKQSNKSGGRWSRGGGSSDDTGSDRKPPTSQPAEPTHSAASSPQSASKTRQQPYIATNN
PSSSQTRFMATAFGGPSGDSRRGVVSPRPKGREAKNTLCRNVTIYGHCRYENTCPYIHDN
LKLNQNENTKKRFNVDSPSFTPLQANTNGSVTPSPRSAAISPKAANAAVFTPKSQRSTVT
TPRVHAKEPTIDWHSQDFQEFVPQSFDGQQMVDPNLGYDPFSTPTSISTLGGPSHQAATI
NPYAQDASATYFQNANAFQNPAYHLYWPVGPQPTGLLAYQRTAHDFFIPDALREELQKKA
EVARQIAPNSTLPVIEQFHSLFCLDMSPQKNTAPFGYASWIYRAVSSKDGKTYALRRLEN
FRLTSETAIRSAQPWKRVLNGNVVTIHEAFTTRAFGDSSLILVTDYHPNSKSLADEHFKP
VQRFHGRQPTSSHVPEQVLWGYTVQIASALKAIHGSGLAARLITPSKILLTSKNRIRLNA
CGIMDIVQFDNARSVPELQADDFVQLGRLILCIANNNPTAHLQMQKSMDYITRSYTARLK
ECVQWLLNPQPPTGTPSSPTSPAPLQKDIDTFLGGIADQFASVFDSELHAQDSLTVHLGK
ELESSRLVRLLIKLNMINERPELDASQSMPGNSGTNPSSVWAETGERYYLKLFRDYVFHQ
VDANGHPVTDLAHILDCLNKLDAGTDERIGLISRDEQNVLIVSYREVKRALESSFQDLVR
AGRK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccggcggccctggagatttccgggagccgtccgccctatacagcttcacgtcg
ttgatggactcgctctctaacggcctcgcaggaagcattcaccaaaagggtagcaggttg
cccaccattcagcctgcgtcgccgccgaccaaaggcgcgccgcattcttccacatcgccc
aatcagcctgcatattttcccattcctaggggccacccacatgccacagtcattgcaagc
tccggatcctctaccaccgaatctttttccgaagtgacgtcgtcatcgtcgcgggactcg
ctacccaatccccaagggcgcaacgcccctaccacgccccagaaacaggcgcgcagcaac
aggcggaagcagtcgaacaagtcgggcggcagatggagtaggggaggaggctcatcagac
gataccgggtctgaccgtaaaccccccacgtcacagccagcagagcccacgcacagtgcc
gcctcgtccccccagagcgcgtctaagacacgccaacaaccttatattgctacaaacaac
ccatcgtcaagccagacgcgattcatggcaacagcctttggaggtccttcgggagattcg
cggaggggagtagtctctcctcgtcccaagggtcgcgaagcgaagaacactctctgccgc
aatgtcaccatatacggtcactgtcggtacgagaatacctgtccgtacatacacgacaac
ctcaaactgaatcagaatgagaacaccaaaaagaggttcaatgttgactcgccatctttt
actccattgcaagcaaacacgaacggatctgtgacaccttcgcctcgcagtgctgccatc
tctcccaaggcggctaacgctgccgtctttacacccaaatcacaacgttccactgtcacc
actccgcgtgtgcatgcaaaagagcccacgattgattggcattcgcaagactttcaagaa
tttgttccacagtcttttgatggtcagcagatggttgatcctaatcttggctacgatccg
ttcagtacacccaccagcatatccacactgggtggtccaagccaccaggccgctaccatc
aacccttacgcacaagacgcttcggcgacgtactttcagaacgccaatgctttccagaat
ccagcctatcacttgtactggccggtaggacctcagcctaccggcttgcttgcttaccag
cgcactgctcatgactttttcatacccgatgcgctacgagaagaattgcagaagaaagca
gaggtcgcacgccagattgccccgaacagtactctgcctgtcattgagcaatttcattcg
ttgttttgcttggatatgtcacctcagaaaaacactgcgcctttcgggtatgctagctgg
atttacagagctgtatccagcaaagatggaaaaacatacgcactgcgacgtctcgaaaac
ttccgactgacgagtgagactgctattcgctctgctcaaccatggaaacgtgttttgaac
ggcaatgtcgttactattcatgaagcatttaccactcgagcctttggcgatagttccttg
attctcgtcacagattaccatccgaattccaaatcccttgctgacgagcacttcaagccc
gtgcagcgatttcatggaagacagccaacctcatcgcatgtaccagagcaagttttatgg
ggctacactgtccaaattgcgtcagcgttgaaggcaatacatgggtcaggattggctgca
agattgatcacaccttcgaaaatcctactcacttcaaaaaaccgcatacggttaaatgcc
tgtggcatcatggatattgttcagtttgataatgcgcgatctgtgcctgagcttcaggca
gacgactttgttcaacttgggcggttgatactttgcatcgcgaacaacaacccaacagct
cacttacagatgcagaagtccatggactacattacaagaagttatacggcccgcctcaag
gaatgtgttcaatggttgctcaacccccaaccaccaactggaacgccatcatctcccacc
tctccagcacctctgcaaaaggacattgatactttccttggtgggattgctgatcagttt
gcatctgtttttgatagtgagcttcatgcccaggacagcctcacagtccaccttggtaaa
gagttggaatcatcacgattggtccgcctgttgatcaagctcaatatgatcaatgagcgg
ccagagctagacgcgtcccaaagtatgccagggaacagtggcacaaatccatcgtcggta
tgggccgaaactggcgagcgctattatcttaaactcttccgcgattacgttttccaccaa
gtggatgcaaatggacaccccgttacggatctggcgcatatcctggactgtcttaacaaa
ctagatgccggtacagatgagagaataggactaatcagcagggacgagcaaaacgtgctg
attgtgagctaccgagaagtgaaacgagcactggaatcatcgttccaggatttagtacgg
gcagggcggaaatag
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integrated database retrieval system