Bipolaris zeicola: COCCADRAFT_8484
Help
Entry
COCCADRAFT_8484 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
bze
Bipolaris zeicola
Pathway
bze03013
Nucleocytoplasmic transport
bze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCCADRAFT_8484
09122 Translation
03013 Nucleocytoplasmic transport
COCCADRAFT_8484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_8484
03041 Spliceosome [BR:
bze03041
]
COCCADRAFT_8484
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
COCCADRAFT_8484
Spliceosome [BR:
bze03041
]
Complex C
Other components
EJC/TREX
COCCADRAFT_8484
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
COCCADRAFT_8484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
19151844
NCBI-ProteinID:
XP_007716409
JGI:
8484
UniProt:
W6Y2M3
LinkDB
All DBs
Position
Unknown
AA seq
2325 aa
AA seq
DB search
MAPPPKRKRPDRTYSQDDDRTGRPSPHRPQNMGLAHNQQQTNSPRGGGGAGRRPSRNNGR
GGSSVPQSPNVSHASPPAMSPTSNTSFTSARPPQPTPSTPVRPAAPAQPSRPTTPRQVPE
SNEYLTPDRVAHWNGEARDAVVQAALAAQREGNVLTLSVIFHEIIEASINHVLDAGELGS
MVRDIVSVPSDDDDIDSTSTFLDTLSSLTNDESKQASVRQMLVATNIDISRMRSELENDL
LKSLGLVRDSFGKMAVRKATHALYRQSNYNLLREETEGYSKLMTEYFTTVNSEPPNQEVV
SETYQRVNALIGAFDLDIGRVLDVTLDVFANLLVKHGRFFVKLLRTSAWWPELRGFDNIE
WEEPEVPTLPRWAEPGSKLWYYSDEEKEEQLRLRESRDRKFWQRVGELGDRAGVQAFFEL
GARRVTSNNRQPDPTLLAEGASLSKQQAARKWADEWMAQTKTLPPSGNDIAAQLLGFKLR
FYASDVRDASDVLPENLMYLIALLIKIGFISILDLYPHLYPLEEDMAAHKEKLLKAKKER
EDKERGAVSNALTMAGALPDDTPGQPTVSRLRDTESKSKPDTGRNTPVNPDEPVEKKKDL
PEPTDQKYTLLKSLLCIGALPEALFILGRHAWFLEVYPELQGLIFRLAHHSVGKMYEASK
PTPFEEPTISIKGSSVRGPQRPSDFIPRRTLRWAKPDQKDSDGGVDYKFYWEDWVDNVPV
CQEVDDVIKLCTSLLGLVGAECGRDTVLLTKIIRIGKRNLADDPSEENRKRWINFSATFI
APAVSFTGRNPGIINEVWDLFKHFDTATRYTIYQQWFNGMLKPASKRAFEQVRDETKKTM
SRISATNTKEYGRKIAKISYASPGWVFKTTVKQLVNYPNMITALVECSRYLTLLGYDVLT
WTLVTYLLSPDKGSHQDDGMLSAPWLKNIATFVGKAYAKYHLMDPLPILQLTMRQLLIAE
GELYMLDVLEQMVKSMGGISLSGSVSEAMTLALCAGPALRSFILQHRLADYRHLSGSSAR
RLIRCLKETGLGPQILIALAQHVEAYVHRVDQQEVPDKPVLFNVDKLRSTLLQYLELLRA
YITVDDFDTIFPSLIEMMSDFNIEPDVAFTIARASIAAKANEFRTDQRAKLIANTQSNGD
TSMSGIEEESPTNGAKAEVAATETAKTSEDVEMADTDPSAVSEKPSLPEVPNVEIERLAT
QLQERLPGKFGNHPCLSYYVTFWQLSLPDVDIGGIDQQYQETIEYFERQLPAPVPDRRNY
RSNVPKAETDAARRAKHEIPKLKEERKNVTQANAATQDSLRAELKGWFAGVAMIGPQCDA
LHNALLQDCFIPRSRISLEDAQYASSMLMFMHSSGVPGFRMSRLLDVLFSINRLTCIISM
YTEAESLSFGRFLSDILRELQVWHENKDDAYARNAQGPEKNLPGFGRSYDANGNATSFFT
YDQFCMLLFKWHRSLTTALKTCLETGRYMQMRNAINVLHALGNNYPKVQSLGAELKQTIE
HLSKNEERGDLKKSLESVLGPITKGEKSWQDDHVFRNLPAPTPAPGSTTNASDKAATESK
KSSQTQDTKLNASAPAFKPTPEQNGTQQTPLRDMDDNTSKRNVSTPGTPAPSRERDATHP
TSRHSEAQPATPQQQELVMGRSAPKPGPPMHPSSVPQRPDGRNMPMQPATAGRPSHALPS
RPDSQPSRARQSERPVMDRPPEAAHSRYDNRGPPQNDYGRLDRPGDVGRHREPSPGRRGR
MPDGRTPERIPPTAEHREWSGRERDYDDRTLRAPLRDTRAPPVRPPPTWDARDTRDPRDQ
RERPDPRMHPVPPAMENRRMPSSTSLNNEYRREVPPANVPYGMEQNERPQRLPQAPISAK
EEPTVNPARAALINQVEHGRHDAPRPDRDSRRERDSRLNSPRHGDDRRGEDRRMEERLPG
YHGRSDMPREHRDDRSLPIPPSNRDRRDEMGSGAPTGPRGGRNDPTTSSRGTRDMFQPNS
GPRSSGHQAQDPNYGRLNQPSDPGPPSGPRSDRTSSQSQPPTPTAPSGPAASLPAGVHPS
RLVNIEGRGPNGPPLQTNVPNAPSGPRGSNRASQGQIPSSPNGWGPPTGPAAGDRGSRNS
GNPLRTINNVLSANTPAERSGDRNVPPTNPPVRGRGAARANGPIDGSGGTASPMLPPPHG
SMPTQYQRGGRNDDSQSRVEGIPQEEIRSESRSHKDSRRSEKSGRERSTDRPDRRSDERS
SRSGTSDRIEGERSSERERGGREKRGGDRESSRRDREREGESRSGREPRESSRRERGSRD
EGRTSGRDERDRRSRGNGGGSGGDDGRKRGRDPQDQAHGDAKRRR
NT seq
6978 nt
NT seq
+upstream
nt +downstream
nt
atggctcccccgccaaagcgaaagcgacctgaccgcacttactcacaggatgacgaccgc
accggccgcccgtcgccgcatcgcccgcagaacatgggactcgcgcataaccagcagcaa
accaacagtccacgcggcggcggcggagctggtaggcggcctagcagaaacaatggccgc
ggcggctctagcgtgccccagagtcccaacgtctcacatgcatcgccgcctgccatgtcg
cccaccagcaatacttccttcacatcagccaggccgcctcagccgacaccgtccactcct
gtgcgccctgccgcccctgcgcagccctcgagacccacgacgccgcgccaggtacctgag
agtaatgagtacctgacaccagaccgggtcgctcattggaatggcgaggcacgcgacgct
gtggtgcaggctgctttggctgcccagcgcgagggcaacgtactcaccctgtcagtcata
ttccacgaaatcatcgaggcatccataaaccatgtcctggatgctggcgagttgggctcc
atggtgcgggacattgtatcggtaccgagcgacgacgacgacattgactcaacatcgact
ttcctcgatacgttgagttcgctcacgaacgatgagagcaagcaggcgtctgtacggcag
atgcttgttgccaccaacatcgacatttcacgcatgcgctccgagctcgagaacgacctc
ttgaagtcgctgggtctggttcgcgatagttttggcaagatggctgttcgcaaagccacc
cacgcactgtaccggcaatccaactacaacctcctgcgcgaagagaccgagggctactcg
aagttaatgaccgaatacttcaccaccgtgaacagcgaaccaccaaaccaggaagtcgtg
agcgagacctaccaacgggtaaacgctctcattggtgccttcgacttggatatcggacga
gtcctcgatgtgacactcgatgtgtttgccaatcttctagtcaagcacggcagattcttt
gtcaagttgttacggacaagcgcatggtggcccgagctacgcggtttcgacaatatcgaa
tgggaggaacccgaagttcccacgcttcctcgctgggctgagccggggtccaagctctgg
tattactcagacgaagagaaggaagagcagctacgactacgcgaatcccgagaccgaaag
ttctggcaacgtgtgggcgagttgggcgatcgggcaggcgttcaggcattctttgaactt
ggtgcacgccgtgttacttcgaacaaccgacagccggacccgacactactagcagaaggt
gcatcgctctccaagcagcaggcggctcgaaaatgggccgacgaatggatggcgcaaacc
aagactcttcctccctctggaaacgacattgcagcgcaacttcttggcttcaagcttcgt
ttctatgcttctgacgtccgcgatgcgtcagatgttctccccgagaacctcatgtacctg
atcgcgctcttgatcaagattggattcatttccattcttgacctatacccacatctatac
ccattggaagaggatatggctgcgcacaaggagaagcttctgaaggctaagaaggaaagg
gaggacaaggaacgtggtgcggtttctaatgcgttgactatggctggcgcattacctgat
gatacacctggacaacctaccgtttcccgtctgagggataccgaaagcaaatcaaaaccg
gatactggaagaaatacgcctgtaaaccccgatgagcctgtggaaaagaagaaagaccta
cccgagccaacagatcagaagtacactcttctgaaaagtctgctgtgtattggcgcactg
ccggaagcattattcatccttggacgccatgcctggttcctggaagtataccctgagctc
caaggcctcatcttccgtttggctcaccactccgtgggcaagatgtacgaagcatcaaag
cctacgccgtttgaagagcccactatttctatcaaaggatcgagtgtacgtggccctcag
aggcccagcgacttcattccgcgacggactcttcgatgggccaagcctgaccagaaggat
tctgatggaggtgttgattacaagttctattgggaagactgggttgacaatgtccctgtg
tgccaggaagtagacgacgtgatcaagctttgtaccagtcttctaggcttggtcggagcc
gagtgcggcagggatactgtgctcctaacaaagatcatacgcattggcaagcgaaatcta
gccgatgacccctcagaagagaaccggaaacgatggatcaacttttcagccacctttatc
gcgcctgcggtatccttcaccggcaggaaccccggaataatcaatgaggtgtgggacctc
ttcaaacatttcgacaccgccactcgatacaccatttaccaacaatggttcaatgggatg
ctcaagccagccagcaagagggctttcgaacaagtccgcgatgagaccaaaaagacaatg
agccgtatttctgctaccaacacgaaggagtatggacgtaaaattgccaaaatttcgtac
gccagccctggatgggtcttcaagacaacggtcaagcaattagtcaactaccccaatatg
attaccgctttggtagagtgcagccgatatctcaccttgctcggatacgatgtcttaacc
tggaccttggttacataccttctcagccccgataaaggctcgcatcaggacgacggcatg
ctatctgccccttggctcaagaacattgctacctttgtcggcaaagcttacgcaaagtac
catttgatggatcccctcccaatactgcaactcaccatgcgtcaactcttaattgcagaa
ggtgagctctacatgttggatgtgcttgagcagatggtcaagtctatgggtggaatcagc
ctcagcggatccgtctctgaggcgatgaccctagccctctgtgctggaccagcgcttcga
tcctttattttgcagcatcgcttagcggattatcgacacttgtccggttcttctgcgcga
cgtctgattaggtgcctgaaagagacaggtttggggccgcagattcttattgcacttgcg
cagcacgtggaggcttacgttcaccgtgtcgatcagcaagaggttcccgacaagccggtt
ctctttaacgttgacaagctccgttccactctccttcagtatctggagctcctccgagca
tatattaccgtggatgacttcgataccatcttcccgtctcttatcgagatgatgtctgat
ttcaacatcgagccagatgtcgccttcaccattgctcgtgcaagtattgcggccaaggct
aatgagttccgaactgatcaacgcgcgaaactcattgccaacacacagtcaaatggtgat
acttctatgtcaggcatcgaagaggagtcacctacaaacggcgccaaagccgaagtagca
gctaccgagacagcaaagacgagcgaagatgtcgaaatggcagatactgatccatctgcc
gtctcagagaagccttcattacctgaagttccaaacgtagaaattgagcgcttagcaacc
cagctccaagaaagattacccggtaagtttggaaatcacccctgtctgtcatactacgtc
accttttggcaactctccctgccagatgtcgacattggaggaatcgatcaacagtaccaa
gaaacgattgagtacttcgagcggcagttgcctgccccagtccctgatcgtcgtaattat
cgatccaacgtcccgaaggcggagactgatgccgcacgacgggcaaagcatgaaattcct
aaactcaaggaagaaagaaaaaacgttacacaagccaacgccgcgacacaagatagcctc
agggctgagctcaaaggatggtttgccggtgtagcaatgattggcccacagtgtgatgcg
ttgcacaatgctttgcttcaagactgcttcattccacgcagccgcatatcattggaagat
gcacaatatgcctcgtcaatgctcatgtttatgcatagttcaggcgttcctggattccgc
atgagtagactgttggacgtcctcttctctattaacagacttacatgtatcatcagcatg
tataccgaagcagagtcgttatcctttggtcgattccttagtgacatacttcgtgagcta
caagtttggcacgagaacaaggacgatgcgtacgccaggaacgcacaaggaccagaaaag
aacctccctggttttggaaggagttatgatgccaatgggaacgccacgagtttctttacg
tacgatcagttttgcatgttgttgttcaaatggcacaggtcgcttactactgcgctgaag
acttgtcttgagactggtcgctacatgcagatgcgcaatgctatcaacgttttgcatgct
ctgggcaacaactaccccaaggttcagagcttaggtgcagagctgaagcagacaatcgag
catctgagcaagaatgaggagaggggtgatctcaagaaatcattggaatcggtcctgggt
cctatcacaaagggtgagaagtcatggcaggacgaccatgtattccgtaatctacctgca
ccaacacctgctcccggaagtacgaccaatgctagtgacaaggctgcaacggaaagcaaa
aagtcttcgcaaacacaggacacaaagctcaatgcatctgcacctgctttcaagccaact
cctgaacaaaacggaacccagcaaacccctctacgagacatggacgacaatacatcgaag
cgtaatgtttctacacctggaactcctgcgccttcaagagaaagggacgcgacccatccc
acatctagacattctgaggctcagccagctactcctcagcaacaagagctagtaatgggt
aggtctgcccctaaacccggtcctccaatgcacccgtcatctgtaccacaaagaccagat
ggtagaaacatgcctatgcaacccgctacggctggaagaccatcgcatgctttgccatcc
cggccggactcacagccatcgagggcacgacaatcagaacgtccggttatggatcggccg
ccagaagctgcacatagccgctacgacaaccgaggtcctccacaaaatgactatggtcga
ctggaccgtcccggagacgtcggacgtcaccgtgagccatctcctggtcgtcgtgggcga
atgcctgatggtagaactcctgaaagaatacctcctacggccgaacaccgagaatggtct
ggtagggagcgcgactatgacgaccgcactttacgggcaccgctacgggatacacgggcg
ccaccagttcgaccaccacccacctgggatgcgcgcgataccagagacccgagagatcaa
cgtgagcgtcctgaccctcgtatgcaccctgtacctccagcgatggagaatcgtcggatg
ccctcttccacttcattgaacaatgaatatcgacgagaggtcccgccagccaatgtccct
tacggtatggagcaaaatgaaaggcctcaacggctgccccaggcgccaatatcggccaag
gaggagcccacggtcaatccggctcgtgctgccctcatcaatcaagttgaacatggcaga
cacgacgcaccaaggcctgaccgcgacagtcgtcgggagcgtgattctcgtttgaattct
cctcgtcatggcgatgataggcgcggggaagatcgtcgaatggaggagcgcttgcctggc
tatcatggacgcagcgatatgccgcgtgaacatcgagacgaccgttctctacctatacca
cccagcaatcgagaccgacgggacgaaatgggatcgggcgcacctacagggccgcgcggc
ggacgcaacgatcccaccacatcatcgcgtgggacaagggacatgtttcaaccaaactct
ggcccacgatcctcagggcatcaggcccaagaccccaattacggaagattgaaccaaccc
tcggaccctgggccaccatcaggacctcgcagtgaccgaacgtcatcacagtcgcaacct
cctacacctactgcaccttctggtcctgcagcgtcactacctgcaggtgttcaccctagt
agacttgtgaatatcgaaggcagaggacccaatggcccgccactgcagactaacgtacca
aatgctccaagcggtccgcgaggttccaacagagcctctcagggccaaattccgtcctcg
ccaaatggttggggtcctcctacgggccccgcagctggagaccgggggtcaagaaatagt
ggaaaccctttacggactatcaataacgtcttgtcagcgaacacgcctgctgaaaggtct
ggtgatcgtaatgtcccgcctaccaacccaccagttcgtggtcgcggagccgcccgagcc
aatggaccgatagacggatccggtggcacggcaagtcccatgttaccaccgcctcatgga
tcaatgccaacccaataccagagaggcggtagaaacgatgacagtcaaagcagggtagag
ggtatcccacaggaagagattcgctcagagtctcgtagccacaaggacagcagacggagt
gaaaagtcaggacgagagcgatcaacagatcgacccgaccgtcgctctgatgaacgaagc
agccgtagtggaacttcggatcgcatagaaggcgagcgcagctctgagcgtgagcgtgga
ggacgagagaagcgtggcggtgatagggagagcagtcgacgagatcgcgaacgagaaggc
gagtcaaggtcaggacgggaaccacgtgagagcagcaggcgtgagcgaggctcccgcgat
gagggacgaacttcaggaagggacgaacgcgataggcgaagccgaggaaacggcggagga
agtgggggagacgatggtcgcaagagaggccgcgatccccaggaccaagcacacggtgat
gcaaagaggaggcgatag
DBGET
integrated database retrieval system
