KEGG   Bipolaris zeicola: COCCADRAFT_85658
Entry
COCCADRAFT_85658  CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
bze  Bipolaris zeicola
Pathway
bze03020  RNA polymerase
bze03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COCCADRAFT_85658
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCCADRAFT_85658
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bze03021]
    COCCADRAFT_85658
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_85658
   03400 DNA repair and recombination proteins [BR:bze03400]
    COCCADRAFT_85658
Transcription machinery [BR:bze03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     COCCADRAFT_85658
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCCADRAFT_85658
DNA repair and recombination proteins [BR:bze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      COCCADRAFT_85658
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 19151998
NCBI-ProteinID: XP_007708304
JGI: 85658
UniProt: W6YPJ1
LinkDB
Position
Unknown
AA seq 171 aa
MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTIVCILDSFDISDGKVMP
GSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQAFVGRSMIPAEIKFDA
NATPPQWTDDGEQVIEKGTNIRIKIKGLRSEVDKMYAVGTMKEDYLGPLPS
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttttttctcaaagaactcgagaagacgattcagctgcacccgtcgtactttggtcct
ctcattcgccagcatatccaccgcgaactgttgcagaaagaggagggatcgagtactgga
aagtatactattgtgtgcatcttggactcgtttgacatatccgatggcaaagtcatgcct
ggctccggctccgctgaatacgttgtacattacaaggcagttgtgtggaggccgtacaaa
ggcgaggtgatggatggcatcgtcacctcagtactccgcacaggtttcttcgtagactgt
gggtctttgcaagcattcgtaggacgaagtatgatccctgccgagatcaagttcgacgcg
aacgccacaccgccgcaatggaccgacgacggagaacaggttattgaaaagggcaccaac
atccgcatcaagatcaagggtctgagatctgaagttgataagatgtacgctgtaggcaca
atgaaggaggattaccttggcccactgccgtcttag

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