KEGG   Bipolaris zeicola: COCCADRAFT_8807
Entry
COCCADRAFT_8807   CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
bze  Bipolaris zeicola
Pathway
bze03013  Nucleocytoplasmic transport
bze03015  mRNA surveillance pathway
bze03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCCADRAFT_8807
  09122 Translation
   03013 Nucleocytoplasmic transport
    COCCADRAFT_8807
   03015 mRNA surveillance pathway
    COCCADRAFT_8807
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_8807
   03041 Spliceosome [BR:bze03041]
    COCCADRAFT_8807
Enzymes [BR:bze01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     COCCADRAFT_8807
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     COCCADRAFT_8807
Spliceosome [BR:bze03041]
 Complex C
  Other components
   EJC/TREX
    COCCADRAFT_8807
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    COCCADRAFT_8807
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 DUF4844
Other DBs
NCBI-GeneID: 19152482
NCBI-ProteinID: XP_007716784
JGI: 8807
UniProt: W6XTF9
LinkDB
Position
Unknown
AA seq 438 aa
MSHEEDLIDYSDEEIQPTEAPANGGAAAAKGGLAAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GVATILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLSNKDTHPHII
VGTPGRINALVRDKHLRLANLKHFVLDECDKMLDQPDMRNDVQSIFRATPQHKQVMMFSA
TLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYVKLDEKEKNRKLNDLLDNLEFNQ
VIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPEDEAVLKSIEERFQV
ELPEFPEDGVNSATYMDN
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgtctcacgaggaggatctcattgactactccgacgaggagatccagcccaccgaggcg
cccgctaacggcggtgcggctgcggccaagggcggtctcgctgctggtgatgctgctggc
gacaagaagggcagctatgtcggcatccattctaccggtttccgcgacttcctgctcaag
gacgagctcgtacgagcaattaccgactgtggcttcgaacatccttccgaggtccagcaa
gttaccatcccccaggcaatcctcggaaacgatgtcctttgtcaggccaagtctggtctc
ggaaagactgccgtcttcgttctcgcaaccctccagcagatggacgagaagcccgagcct
ggtgttgccaccattctagtcatgtgccacactcgcgagttggcctaccagatccgcaac
gagtacaaccgtttcgccaagttcttgccagacgtcaaggtcggtgtcttctacggtgga
acacctgtacagaaggacattgagctccttagcaacaaggacacccacccccacatcatt
gtcggaacacctggtcgcatcaacgcccttgttcgcgacaagcacctccgtcttgccaac
ctgaagcactttgttcttgacgagtgcgacaagatgcttgaccagcctgacatgcgcaac
gatgtccagtccatcttccgtgccactccccagcataagcaggtcatgatgttttcagct
acgctgaacaaggacgtgcgtgttgtttgcaagaagttcatgcagaacccgcttgagatc
tacgtcgacgacgagaagaagttgacgctgcacggtcttcagcaatactatgtcaagctt
gacgagaaggaaaagaaccgcaagctgaacgaccttcttgacaacctggagttcaaccag
gttatcatctttgttcgttccactctgcgctgctctgagcttgacaagcttctccgcgag
tgcaacttccccagcactgctgtgcactctggcattagccaagaagagcgtattaagcgc
tacaaggagttcaaggagttccagacacgtatctgtgtgtcgacggatattttcggacgt
ggcattgatgttgagcgcatcaacgtagcgatcaactacgacatgcccgacaaggctgat
gcatacctgcaccgtgtcggtcgtgcaggacgtttcggaaccaagggtctgagtatctca
ttcgtgagcagccccgaggacgaggctgttctcaagtcgattgaggagcgattccaggtc
gaactccccgagttccccgaggacggagtcaactctgccacttacatggacaactag

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