KEGG   Bipolaris zeicola: COCCADRAFT_96239
Entry
COCCADRAFT_96239  CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
bze  Bipolaris zeicola
Pathway
bze03013  Nucleocytoplasmic transport
bze03015  mRNA surveillance pathway
bze03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCCADRAFT_96239
  09122 Translation
   03013 Nucleocytoplasmic transport
    COCCADRAFT_96239
   03015 mRNA surveillance pathway
    COCCADRAFT_96239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_96239
   03041 Spliceosome [BR:bze03041]
    COCCADRAFT_96239
   03009 Ribosome biogenesis [BR:bze03009]
    COCCADRAFT_96239
   03012 Translation factors [BR:bze03012]
    COCCADRAFT_96239
Enzymes [BR:bze01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     COCCADRAFT_96239
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     COCCADRAFT_96239
   mRNA cycle factors
    Stress granule specific factors
     COCCADRAFT_96239
Spliceosome [BR:bze03041]
 Complex C
  Other components
   EJC/TREX
    COCCADRAFT_96239
Ribosome biogenesis [BR:bze03009]
 Eukaryotic type
  90S particles
   Helicases
    COCCADRAFT_96239
Translation factors [BR:bze03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    COCCADRAFT_96239
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 Flavi_DEAD TniB AAA_22 UvrD-helicase Helicase_RecD
Other DBs
NCBI-GeneID: 19154112
NCBI-ProteinID: XP_007712335
JGI: 96239
UniProt: W6YPJ0
LinkDB
Position
Unknown
AA seq 399 aa
MADGIDRNADDKMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVC
KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQQVIMGLGDYM
NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQ
RERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTQDDVRILRDIELYYSTQIDEMPMNVADLLS
NT seq 1200 nt   +upstreamnt  +downstreamnt
atggcagacggaatcgaccgaaatgccgacgacaagatggagttctccacctccaaggag
gtcacggttgcgccgaccttcgaggccatgcacctaaaagagaacctgctgcgcggcatc
tacgcctacggatacgagtcgccttcagctgtgcagtcgcgtgctattgtgcaggtctgc
aagggacgcgacaccatcgcccaagcccagtcaggaacgggaaagacagcaaccttttcc
atttccatcctccaggttatcgacacggctgtcagagagacgcaagcacttgtactgtca
cccacgcgcgagttggcgacccagattcagcaggtcatcatgggtctcggcgactacatg
aatgtgcaatgccacgcctgtatcggaggcaccaacgttggcgaggatattcgcaagctc
gactatggtcagcacgtagtctctggaacacctggacgtgttgccgatatgattcgccgc
cgcaacctccgcacgcgcaacatcaagatgcttgtccttgatgaagccgacgagcttctt
aaccgtggtttccgtgagcaaatctacgacgtctaccgctacctcccccctgcgactcag
gtcgtggttgtttccgccacccttccatacgatgtgcttgagatgacgaccaagttcatg
accgaccccgtgcgcattctagtcaagcgtgacgaattgacactagaaggtctcaagcaa
tacttcatcgccatcgaaaaggaagagtggaagtttgatacactctgcgatctctacgac
acactcaccatcacacaagcggtcatcttctgcaacacacgccgcaaggtcgactggctc
accgacaagatgcgcgaggccaattttactgtttcctcgatgcacggagatatgccacaa
agggaacgagacagcattatgcaagacttccgtcaggccaactcccgcgtgctcatttcc
accgatgtttgggctcgtggtatcgacgtgcaacaggtgtcgctcgtgatcaactatgac
cttccgtcaaaccgtgaaaactacattcacaggattggtcgaagcggccgatttggacgt
aagggtgtggccatcaatttcgttactcaggatgacgtccgcatcctccgtgacattgag
ttgtactactcgactcagattgatgagatgcctatgaatgttgccgaccttctctcgtag

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