Bipolaris zeicola: COCCADRAFT_9926
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Entry
COCCADRAFT_9926 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bze
Bipolaris zeicola
Pathway
bze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCCADRAFT_9926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_9926
03041 Spliceosome [BR:
bze03041
]
COCCADRAFT_9926
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
COCCADRAFT_9926
Spliceosome [BR:
bze03041
]
Complex B
Other components
Prp19-related factors
COCCADRAFT_9926
Complex C
COCCADRAFT_9926
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
Mad3_BUB1_I
TPR_8
ARM_TT21
ARM_TT21_C
APOBEC_C
Motif
Other DBs
NCBI-GeneID:
19154764
NCBI-ProteinID:
XP_007718204
JGI:
9926
UniProt:
W6Y8T8
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MPGELLRTVTASLSRPTKRKMEPSTDLFLITDQDVAYEQDIQRNAGSVKPWLDYYSFKKS
RGSILEQAFVLERAVTTLPRSYKLWKLYLELRTKHLANKNPAKFAPHYVKVNALFERALV
LLNKMPRIWEMYLNFLMQQPLVTTTRRTFDRALRALPLTQHNRIWALYRPFATSASGETA
VKIWRRYMQIHPEDAEDFIELLKDMRKYTEAVKKYMEILNNPRFKSKEAKGPFQFWTEMI
DLIIDHAKEIDTSDDSGIDVEKIIQSGITKFPDQRGILWVGLARYWMHKGEYEKARDVFE
EGVTTVMTVRDFSVVFDTYVEAEETMIGIKLNEAAVRSEKGKIDEAADADLDIRMVRFES
LMQRRPFLLNDVMLRQNPHNVIEWEKRVALWGDNKKEVVQTYTDAIAAINPKKAVGKFHE
LWTNYAKIYEAGGDLQNARVIMEKAVKVPFKSVSELAEMWCEWAEMELRNENFDKAVDIM
AKATQAPKRSNVDYFDESLSPQQRVHKSWKLWSFYVDLVESVSTLEETRKIYERIFELRI
ATPQTIVNYANLLEENKYFEDCFKVYERGLDLFSYPVAFEIWNLYLTKAVDRKIGMERLR
DLFEQAVEDCPPKFAKVLYLMYGALEEDRGLARHAMRIYERATRAVADEDRMEMFNFYIT
KSASNFGLTSTRPIYERAIAALPDAEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDP
RTNPEFWKKWESFEVQHGNEDTYKEMLRIKRSVQAQYNTDVNFIASQAVARGQQNGAAAN
EDGTADPADEDAMAALERQARAPAGFVAASTGPQGGNIKPAEEPTANPDAIDLDDDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgaactcctcaggactgtgaccgcgagcctctcgcggcccaccaagcgcaag
atggagccctcgaccgaccttttcctcatcaccgaccaggacgtcgcgtacgaacaggac
atccagcgcaatgccggcagcgtcaagccatggctcgactactacagcttcaaaaagtca
cgtgggagcatcctggagcaggcctttgtgctcgagcgcgcagtcaccacgctcccgcgc
tcctacaagctgtggaagctgtacctcgagttgcggacaaagcaccttgccaacaagaac
ccagccaagttcgcgccccactatgtcaaggtcaacgcccttttcgagcgtgcccttgtc
ctgcttaacaagatgccgcgaatctgggaaatgtacctcaatttcctcatgcagcagccg
ctcgtcaccactacccgccgtaccttcgaccgagcattgcgcgccctccccctgacccag
cacaaccgcatttgggccttgtaccgacccttcgcgacgtctgcatccggcgagacggct
gtcaagatctggcgccggtacatgcaaattcaccccgaagatgctgaggatttcattgag
ctcctcaaggacatgcgcaagtacactgaggctgtcaaaaagtacatggagattctcaac
aatcctcgcttcaaaagcaaagaagcaaaggggcctttccagttctggactgagatgatt
gatcttatcatcgaccatgctaaagaaatcgataccagcgacgacagcggtatcgacgtc
gagaagatcatccagagcggcatcaccaagtttcccgatcagcgaggcatcctgtgggtc
ggtctggcacgttattggatgcacaagggcgaatacgaaaaagcgcgggacgtcttcgaa
gagggtgtcactacagtcatgactgtgcgcgatttttcagtcgttttcgacacatacgtg
gaagccgaggaaaccatgattggtatcaaactgaacgaggccgctgtccggtccgagaag
ggcaaaatcgacgaggccgccgacgccgacctcgacatcagaatggttcgcttcgagtca
ctgatgcaaagaagaccattcctactcaacgatgttatgttgcgacagaacccgcacaac
gttattgaatgggagaagcgcgttgcgctctggggcgacaacaagaaagaggtggtacag
acatacaccgatgccattgccgcgatcaaccccaagaaggcagttggcaagttccacgaa
ctttggaccaactacgccaagatttacgaagccggtggggatcttcagaatgcgcgcgtt
attatggagaaggccgttaaggtgcccttcaagtccgtttccgagctggctgagatgtgg
tgcgaatgggcagagatggagctccgcaacgaaaatttcgacaaggccgtcgacatcatg
gccaaggctacgcaggcaccaaaacgatccaatgtcgactactttgacgaatctctttcc
ccacaacagcgtgtacacaagagctggaaactgtggagcttttatgttgatcttgtcgag
agtgttagcactttggaagagacaagaaagatatatgaaaggattttcgagcttcgaatt
gctacaccgcagacgattgtcaactacgccaacttgttggaagagaacaagtactttgaa
gactgcttcaaggtatatgagcgtgggttggatcttttcagctatcctgtcgctttcgag
atttggaatctttacttgaccaaagccgtggatcgaaagattggtatggaacgactacga
gacctgtttgaacaggctgtcgaggactgcccgccaaagtttgccaaggtactatatctc
atgtacggtgccctcgaggaagaccgtggtctggccagacatgccatgcgcatctatgaa
cgtgctacacgcgccgtagcagatgaagataggatggaaatgtttaatttctacatcacc
aagtcggcatccaactttggtcttacttctacacgaccaatttacgagcgtgccattgcc
gctctgcccgacgcagaagccaaggaaatgtgtctcaagtttgctgagatggaacgacgt
ctgggagaaattgaccgagcgcgagccatctacggccatgccagtcagttctgcgatccg
aggacaaaccccgagttctggaagaagtgggagtctttcgaagtccaacacggaaacgaa
gacacctacaaggagatgctgcgcattaagcggagtgtccaggctcagtacaataccgat
gtcaacttcatcgcctcccaagctgttgcccgcggccagcaaaacggtgcggccgccaac
gaagacgggaccgcagaccctgccgacgaagacgcaatggctgcccttgaacgccaagct
cgtgcacccgctggctttgtcgctgctagcacaggcccgcagggcggcaacatcaagcct
gccgaagagccaacggcgaacccagacgcgatcgatctcgacgacgatctatga
DBGET
integrated database retrieval system
