Bacteroides zoogleoformans: C4H11_00660
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Entry
C4H11_00660 CDS
T05371
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bzg
Bacteroides zoogleoformans
Pathway
bzg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4H11_00660 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bzg03019
]
C4H11_00660 (rny)
Messenger RNA biogenesis [BR:
bzg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4H11_00660 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Fez1
DsrD
NtrY_N
Motif
Other DBs
NCBI-ProteinID:
AVM51670
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All DBs
Position
complement(153220..154758)
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AA seq
512 aa
AA seq
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MTVVTIVVSIACFIVGGFASYLFFKHGLKKKYDGILKEAEAEAEVIKKNKLLEVKEKFLN
KKADLEKEVAIRNQKIQQAENKLKQRELVLNQRQEEIQRKKMEAEAVKENLEAQLAIVDK
KKEELEHMQRQEIEKLEAISGLSAEEAKERMVESLKEEAKTQAQSYINDIMDDAKLTASK
EAKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIVVDD
TPEAIVLSAFDPVRREIARLALHQLVTDGRIHPARIEEVVAKVRKQVEEEIIETGKRTTI
DLGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLH
DIGKVPDEEPELPHALYGMKLAEKFKEKPDICNAIGAHHDEVEMTSLLAPIVQVCDAISG
ARPGARREIVEAYIKRLNDLEQLAMSYPGVTKTYAIQAGRELRVIVGADKIDDKATENLS
GEIAKKIQDEMTYPGQVKITVIRETRAVSYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgacagtagttacaatagtagtatccattgcctgcttcattgtcggaggattcgcctcg
tacttgttcttcaagcacgggctgaaaaagaaatacgacggcatcctgaaagaagcggaa
gccgaagcggaagtaattaaaaagaataagttgctggaagtgaaggaaaaattcctgaac
aagaaagccgatttggaaaaagaggtagccatccgcaaccagaaaatacagcaggcagag
aacaaactgaagcaacgtgaactggtattgaaccagcgccaagaagagattcaacgcaaa
aaaatggaagccgaggccgtaaaagagaatctggaggcccaattagccattgtagacaaa
aagaaagaagagttggaacacatgcaacggcaagagatagagaagctggaagccatatcc
ggactctctgccgaagaagccaaagagcgcatggtggaatcgctgaaagaagaagccaaa
acgcaagcccaatcatacatcaacgacattatggatgatgccaaactgacggcaagcaaa
gaggccaaacgcatcgtcatacaatccatccaacgcgtggcaacagaaacagccatcgaa
aattccgtaaccgtattccacatcgagtcagacgaaatcaaaggtcgcatcatcggtcgc
gaaggccgcaacatccgtgcattagaagctgctaccggtgtagaaatcgttgtagacgat
acgccagaagccatcgtattgtctgccttcgaccctgttcgccgtgagatagctcgttta
gctcttcaccaactggtcacagacgggcgcattcatcctgcacgtatcgaagaagtagta
gccaaagtgcgcaagcaagttgaagaagaaatcatagaaaccggcaagcgcaccaccatc
gacttgggcatccacggtctgcaccccgaactcattcgtatcatcggtaagatgaaatat
cgttcttcctacggccagaaccttttgcagcatgcccgcgaaacggccaacctttgcgcc
gtgatggcatcggaactggggctgaaccccaagaaggccaaacgtgccggattgctgcac
gacataggcaaagtgcccgatgaagagccggaattgccgcacgctctctacggcatgaag
ctggccgagaagtttaaggaaaaaccggacatctgcaatgccatcggagcccaccacgac
gaagtggagatgaccagcctgcttgcccccatcgtgcaagtgtgcgatgccatatcgggg
gcacgcccgggagcacgccgcgaaatcgtagaagcatacatcaagcgactgaacgacctt
gaacaactggccatgtcctatccgggcgtaacgaagacatacgccatccaagccggccgc
gaactgcgtgtcattgtcggtgccgacaagattgacgacaaggcaacggaaaatctctca
ggcgaaatagccaagaagattcaggatgagatgacctatcccggccaggtgaagattacc
gtcatccgcgaaacgcgcgccgtgagctacgctaagtaa
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