Bacteroides zoogleoformans: C4H11_01455
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Entry
C4H11_01455 CDS
T05371
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bzg
Bacteroides zoogleoformans
Pathway
bzg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4H11_01455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bzg03019
]
C4H11_01455
Enzymes [BR:
bzg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4H11_01455
Messenger RNA biogenesis [BR:
bzg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4H11_01455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
Cas3-like_C_2
AAA_30
DUF1934
Motif
Other DBs
NCBI-ProteinID:
AVM51799
LinkDB
All DBs
Position
complement(327211..328464)
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AA seq
417 aa
AA seq
DB search
MNFAELNLNDNVLDALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL
NELSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK
GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE
RQTIMFSATMPAKIQQLAHNILNNPVEVKLAVSKPAEKIVQAAYVCYENQKLGIIRNLFA
EETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREAVMYEFKAGRINILVA
TDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGSFKAIE
RFLEKDIYKIPFPEELGKAPEYNPKSSDGNKRENNNGRKQPRKKSNRNKQNNKPKRS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgccgaactcaatttaaatgacaatgtactcgatgcgctggatgccatgcgt
tttgaagagtgtacacccatacaagagaaatctattccggtcatacttgaaggacgggat
ttgatagcggtagcacaaaccggaaccgggaaaaccgcagcgtatttattgcccgtactg
aacgaactttcggaaggcgggcatccggctgatgccattaattgtattgtcatggccccc
actcgcgaattggctcagcaaatagatcagcagatggaaggcttttcttacttcatgcct
gtatccagcgtggctgtatatggcggtaatgacggaattttatttgagcagcaaaaaaag
gggctgactttaggagctgatgtagtcattgcgactcccggccgtctgatcgctcatctc
agtctggggtatgttgacctttcacgtgtctcttatttcattttggacgaagccgaccgt
atgctcgatatgggattttatgatgatatcatgcaaatagtcaagtatcttcccaaagag
cgtcaaacaatcatgttctctgccaccatgccggctaagattcaacagttggctcacaat
atactcaataacccggtggaggttaaacttgcagtttcaaagccggcagagaagattgtg
caagcagcctatgtttgttatgaaaatcagaagttggggattatccgcaatttgtttgct
gaagaaacgccggaacgcgtcatcatttttgcttcttccaaattgaaagtaaaagaggtg
accaaagctttgaagcaaatgaaactgaatgtcggcgagatgcactcggatttggagcag
gcacagcgtgaagccgtgatgtatgagttcaaggccggacgtatcaatatcttggtggct
acagacatcgtggcaagaggtattgatattgatgatattcgtttggtgataaattatgat
gtccctcatgacagtgaagactatgtgcatcgtatcggtcgtacagcccgtgcgaacaat
gacggtgtagccatcacttttgtgtcagaaaaagaacaagggagttttaaggctattgag
cgtttcctggaaaaagatatttataagataccgtttccggaggagctcggaaaagcgccg
gaatataatccaaagtcatccgatggaaataaacgggagaataacaatgggcgtaaacag
ccaagaaaaaaaagcaaccggaataagcaaaacaacaagcctaaacgttcatga
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