Bacteroides zoogleoformans: C4H11_02625
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Entry
C4H11_02625 CDS
T05371
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bzg
Bacteroides zoogleoformans
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bzg03009
]
C4H11_02625
Enzymes [BR:
bzg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C4H11_02625
Ribosome biogenesis [BR:
bzg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C4H11_02625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
N6_N4_Mtase
Cons_hypoth95
MTS
Methyltransf_11
UPF0020
PCMT
PrmA
Motif
Other DBs
NCBI-ProteinID:
AVM51992
LinkDB
All DBs
Position
603079..604551
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AA seq
490 aa
AA seq
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MARKRKELPLLERVTITDVAAEGKAIAKVDDLVVFVPYVVPGDVVDLQIKRKKHHYAEAE
AVKFHEYSPVRAVPFCQHYGVCGGCKWQVLPYSEQIRYKQKQVADNLTRIGKIELPEISP
ILGSEKTRFYRNKLEYTFSDKRWLTAEEVRQNTVYEQMNAVGFHIPNAFDKVLAIEKCWL
QDDISNRIRNAVRDYACEHDYPFINLRTHEGMLRNMIVRTSTTGQLMVILICKIEKEEEM
ALFKQLLQYVADTFPEITSLLYIINNKLNDTITDLDVHTFKGKDHIFEEMEGLRFKVGPK
SFYQTNSGQAYNLYKVARHFAGLTGDELVYDLYTGTGTIANFVSRQARRVIGIEYVPEAI
EDAKVNAEINGIENTLFFAGDMKDLLTEDFIDRYGRPDVIITDPPRAGMHQDVIDVILFA
EPERIVYVSCNPATQARDLQLLDAKYRVKAVQPVDMFPHTHHVENVVLLQLKPGNEKSPA
THHQPLTADR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtggcaagaaagagaaaagaactccccctgttggagagagtgacgataacagatgtggct
gccgaaggaaaagccatcgcaaaagtcgatgatttggttgtattcgtaccctatgtggtt
cccggcgacgtggtcgacttgcaaatcaagagaaaaaaacatcattacgccgaagccgag
gcggtgaagtttcatgagtattcaccggtaagggcagtcccgttctgccaacactatggc
gtatgcggcgggtgcaaatggcaagtgctcccctattccgaacaaatcagatacaagcaa
aagcaggttgccgacaaccttacgcgcatcggcaagatagaacttcctgaaatatcgccc
atcttaggttcggaaaagacccgattctaccgaaacaagttggaatatactttttccgac
aaacggtggctgacggcggaagaagtgcggcaaaacacggtgtacgaacagatgaacgcc
gtgggctttcatatccccaacgctttcgacaaagtgctggccatcgagaaatgctggttg
caggacgacatatccaaccgcatccgcaatgccgtgcgcgactatgcctgcgagcacgat
taccccttcatcaacctgcgcacccacgaaggcatgctgcgcaacatgattgtgcgcaca
tccaccacaggccaactgatggtaatcctcatctgcaagatagagaaagaagaggaaatg
gcgctcttcaagcaactgctgcaatacgttgcagacacattccccgaaatcacgtcgctg
ctctatatcattaataataagctgaacgacaccattaccgaccttgatgtgcataccttt
aaggggaaagaccacatctttgaagagatggagggcctgcgcttcaaagtagggccgaaa
tcattttatcaaaccaactccggacaggcatataatctttataaagtggcacgccacttt
gccggactgaccggtgacgagttggtgtacgacctctacacgggcacgggaaccatcgcc
aatttcgtttcgcgccaggcccgtcgggtcatcggcatagaatacgtgcccgaagccatt
gaagacgccaaagtcaatgccgaaatcaacggaatagagaataccttgttctttgccggc
gacatgaaagacctgctgacggaagacttcatcgaccgatacggtcgccccgacgtcatc
atcaccgaccctccacgtgccggaatgcatcaggacgtaatagacgtcatcctctttgcc
gaacccgaacgcattgtatacgtcagctgcaatcccgccacgcaagcgcgcgacctgcaa
ctgctcgatgcaaaataccgtgtaaaagccgttcagccggtagatatgttcccgcatacc
caccatgtggaaaacgtagtactgctccaactgaagcccggtaacgagaaatcaccggcc
actcaccaccaaccactcaccgccgaccgttaa
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