Bacteroides zoogleoformans: C4H11_06035
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Entry
C4H11_06035 CDS
T05371
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bzg
Bacteroides zoogleoformans
Pathway
bzg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4H11_06035 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bzg03021
]
C4H11_06035 (rpoC)
03400 DNA repair and recombination proteins [BR:
bzg03400
]
C4H11_06035 (rpoC)
Enzymes [BR:
bzg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4H11_06035 (rpoC)
Transcription machinery [BR:
bzg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4H11_06035 (rpoC)
DNA repair and recombination proteins [BR:
bzg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4H11_06035 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AVM52557
LinkDB
All DBs
Position
complement(1392988..1397283)
Genome browser
AA seq
1431 aa
AA seq
DB search
MAFRKDNKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVVQPGVLSGEVAQYDLLEEGEYLDLLEKLPKDNQFLEDS
DPNKFVAKMGAEAIYDLLSRIDLDSLSYELRNRAGSDASQQRKTEALKRLQVVESFRASR
GRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE
VILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW
DILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVH
LPLSNEAILEAQMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRKGAKGEGLTFYG
PEEALIAYNEGKCDIHAPVSVVVKDVDENGDIVNKMMHDTSVGRVIVNEIVPAEAGYINT
IISKKSLRDIISHVIKVCGVAKAADFLDGIKNLGYYMAFKGGLSFNLGDIIIPEEKEVLV
QKGYDEVEQVINNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTALKNNDETIATLSERI
LGRVSVHDIIHPTTGELIVAGGEEITEDIAQKIEDSPIESVEIRSVLTCESKKGVCAKCY
GRNLASSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANAGIVAKNPARLE
FEELRTVDIIDEAGEPAKVVVGRLAEVRFVDVNTGIVLSTHNVPYGSTLYATDGEIVEKG
KLIARWDPFNAVIITEATGKIEFEGVIENVTYKVESDESTGLREIIIIESKDKTKVPTAH
IMTEDGELIRTYNLPVGGHVVVENGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIITSKTGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVEIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSQNLQAGQIVTARKLRDENSMLKRR
DLKAVEVRDAVPATSIQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKVDRLEGM
KENVICGHLIPAGTGQREFEKIIVGSKEEYDRMLANKKTVLDYAVDESVEN
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagataacaagataaagagtaatttctcgaaaatctctatcggtttg
gcttctcccgaggaaatccttgagaattcgagtggtgaagtgttaaagcctgaaaccatc
aactatcgtacgtataagcctgaacgagacggtctgttttgcgaacgcatttttggcccc
atcaaggattatgagtgccattgcggtaaatacaagcgtattcgttataaaggtattgtc
tgcgaccgttgtggtgtggaagtgactgaaaagaaagttcgtcgtgagcgtatgggacat
attcaactggttgttccggtggctcacatttggtacttccgttcacttcctaacaaaatc
ggttatttgttgggtttgcccactaagaaattggatgccattatttactatgagcgttat
gttgttgttcagccgggtgtattgtcgggcgaagtggctcaatatgatttgcttgaagaa
ggtgaatacttggatttgctggaaaagttgccgaaagataatcagtttcttgaagattca
gaccccaataagtttgttgccaagatgggtgcggaagcaatctatgatttgctgtctcgc
atagatcttgattctttgtcttatgaattgcgtaaccgtgcaggaagtgatgcttcgcag
cagcgtaagactgaagcgttaaagcgtttgcaggtggttgagtctttccgtgcttcacgt
ggacgtaataaacccgaatggatgattgtgcgcattgttccggttatcccgcccgaactg
cgtccattggtacccttggatggcggtcgttttgctacgtctgacttgaatgacctctat
cgtcgtgtcatcattcgtaataatcgtttaaaaagattgattgaaatcaaagcgcctgaa
gtgattttgcgtaatgaaaagcgaatgttgcaggaggccgttgattcattgttcgataac
tcgcgtaaatcgagcgcagtgaagactgatgccaatcgcccactgaaatctctttccgac
agtttgaaaggaaagcagggacgtttccgtcagaacttgctgggtaaacgtgttgactat
tctgcacgttcggttattgtcgtggggccggagctgaagatgggcgaatgtggtattcct
aaactgatggctgcggaactctacaaaccgtttatcattcgcaagttgattgaacgcggc
attgtgaagacagtgaagagtgccaaaaaaatagtggatcgcaaagaacctgtgatttgg
gatattctggaacatgtgatgaaaggacatccggtactgttgaaccgtgctcccacgctt
catcgtttaggtattcaagctttccagcctaagatgatcgaaggtaaggctattcagttg
catccattggcgtgtacggctttcaacgccgacttcgacggtgaccagatggccgttcac
ttgcctttgagcaatgaggcgatattggaagcgcagatgttgatgcttcaatcgcataat
atattgaatcctgctaatggtgctcctattactgtacctgcacaagatatggtgttagga
ttgtattatatcaccaagttgcgtaaaggggctaagggtgaaggtttgactttctatggc
ccagaggaagcactcatcgcttataatgaggggaaatgtgatatccatgctccggtcagt
gttgttgtgaaagatgttgatgagaatggtgacatcgtaaataaaatgatgcatgacacc
tctgtgggacgtgtgattgtcaacgaaatcgtgcctgcggaggctggatatatcaatacg
ataatatccaagaaatcacttcgtgacatcattagccatgtaattaaggtgtgcggtgtg
gccaaagctgccgatttccttgatggtataaagaaccttggttactatatggcttttaag
gggggcttgtcgttcaacttaggagatataattatccctgaagagaaagaagtattggtg
cagaaaggttacgatgaagtggagcaggtaataaacaactacaacatgggtttcattacc
aataacgagcgctacaatcaagtaattgatatttggactcatgtgaactccgaactttct
aatattctgatgaaaaccatttcgagcgatgaccagggatttaattcggtatacatgatg
ttggattccggagctcgtggttctaaagaacagattcgtcagctctccggtatgcgtggg
ttgatggctaaacctcagaaagctggtgccgaaggtggtcagattatcgagaacccgatt
ctttctaactttaaagaaggattgtcggtgttggagtactttatttctactcacggtgcg
cgtaagggtttggcagataccgccttgaagacagccgatgccggatatttgactcgtcgt
ttggttgatgtttcgcatgatgtgattatcaatgaagaggattgtggtacacttcgcgga
ctggtttgtacagctttgaaaaataacgatgaaacgattgccaccctttctgaacgtatc
ctcggtcgtgtatcggtacatgatatcatacatcctactacgggagaattgatcgtggcc
ggtggcgaggaaataactgaggatatcgcgcaaaagattgaggattctccgattgagagc
gttgaaatacgttcggtactgacttgcgaatccaagaaaggcgtttgtgccaaatgctac
ggacgtaatctggcttccagtcgtatggttcaaaagggagaagccgtcggggtcattgcc
gcacagtctatcggtgagcctggtacgcagttgacgttgcgtactttccacgccggtggt
acggccgctaatattgcagccaatgccggtattgttgccaagaatcccgcacgtctggaa
tttgaagaacttcgtacggtagatattatagatgaagcaggtgaacccgctaaggtggta
gtgggccgtttggctgaagtacgttttgtggatgtcaacacgggcatcgtactttctacg
cataatgtgccttatggctctacactgtacgccactgatggtgaaatcgttgagaaaggt
aaactcatcgcccgttgggatccgtttaatgcggtcatcattactgaggctaccggtaag
attgagtttgaaggtgttattgaaaatgtgacctataaagtggagtctgatgagtctacc
ggtttgcgtgaaattatcatcatcgaatctaaggataaaacgaaagtacctacggcccat
attatgactgaagatggtgagttgatccgtacttacaacttgcctgtaggtggacacgtg
gttgtagaaaacggacagaaggtaaaagccggtgaagtgattgtgaaaataccgcgtgct
gtaggtaaagctggtgatatcacaggtggccttcctcgtgtcacggagttgttcgaggcg
cgtaatccgtccaaccctgctgtcgtttcagaaatcgatggagaggttacaatggggaag
gtgaaacgcggcaatcgagaaatcatcattacttccaagaccggtgaggttaagaaatac
ctcgtacctctctccaagcaaatcttggtacaggaaaacgactatgtacgtgccggtacc
ccattgtctgatggtgccatcactccagctgatattcttgcaattaagggccccacggct
gtgcaagaatatatcgtgaatgaggttcaggatgtgtatcgtttgcagggtgtgaagatt
aatgataagcatttcgaaatcatcgttcgccaaatgatgcgtaaagtcgagattgatgaa
ccgggcgatactcgcttcttggaacaacaagtggttgataaactggagttcatggaggag
aacgatcgtatctggggtaagaaagtggtagtcgatgccggcgattcacagaatctgcaa
gcgggtcagattgtaacagcccgtaaattgcgtgatgagaactctatgctgaaacgccgc
gacttgaaagctgttgaagtgcgcgatgctgttcctgcaacttccattcagattcttcaa
ggtatcactcgtgccgctttgcaaacttcgagctttatgtcggctgcctctttccaggaa
acgaccaaagtacttaatgaggccgctatcaatggtaaggttgaccgcttagaaggaatg
aaagaaaatgtaatctgtggccatttgattcctgccggtacgggacagcgtgagtttgaa
aagattatagtaggttctaaagaagagtatgaccgtatgcttgccaacaagaagacggta
cttgactatgccgtggatgagtctgtagaaaattaa
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