Bacteroides zoogleoformans: C4H11_09640
Help
Entry
C4H11_09640 CDS
T05371
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bzg
Bacteroides zoogleoformans
Pathway
bzg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4H11_09640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bzg03019
]
C4H11_09640
03009 Ribosome biogenesis [BR:
bzg03009
]
C4H11_09640
Enzymes [BR:
bzg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4H11_09640
Messenger RNA biogenesis [BR:
bzg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4H11_09640
Ribosome biogenesis [BR:
bzg03009
]
Prokaryotic type
rRNA helicases
C4H11_09640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVM53159
LinkDB
All DBs
Position
complement(2339962..2341911)
Genome browser
AA seq
649 aa
AA seq
DB search
MKTFEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LIQKIDVNQQIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK
RGVHIIVATPGRLLDLMERKTVSLATIRNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLHNAKEITIGRKNEGTSNVKHVVFCVHAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IAKKFEQGEMPTSAQICEKQLLKVIDDLEKVKVNEEEIDAFMPDVYRKLDWLSKEDLIKR
MASHEFNKFLDYYRDREDIETATGNERGAKSGARGERRGSNGGNRQPETGYKRLFINLGK
MDNFFPGELIGLLNKNTRGRIELGRIDLMQKFSFFEVEEKEAGNVVKALNRANWNGRRIS
VEIAGEEGGNDASRGGGKKERSGKKEHNDQKRGYKASKRNDASAAQRSEKLENATSGKKS
KPSREERGYTKARGKKDDWKQFFQGYDDFKGSEPDFSEEGWAKRSKKKK
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagctcggtgtgtcggcggagatacgccgtgccattgaagagatg
ggatatgcgtgtcccatgccggtacaagaggaagtgattccttaccttttaggagaaaac
aatgacgtagtggcgctggcacaaaccggaacaggaaagactgcagcattcggcctgccg
cttatacagaagattgacgtaaaccaacagattccccaatccctcatcctttgccccacc
cgtgagctttgcctccagatagcgggcgacctgaacgattactccaaatacatcgacggc
ctgcgcgtattgcctgtatacggcggttcgtccatcgagagccagatacgcgccctgaaa
cggggagtacacatcatcgttgccacaccgggacgactgctcgacctgatggagcgcaaa
accgtatccctcgccactatccggaacgtagtgatggacgaggccgacgagatgctgaac
atgggtttcaccgacagcatcaacgccattctggccgacgtgccccaagagcggaacaca
ttgctgttctccgccaccatgagtccggagatagcacgcatctcgaagaactacctgcat
aacgccaaggaaatcaccatcggacgtaagaatgagggtacgagcaacgtgaagcacgtg
gttttctgcgtccatgccaaagacaaatacgccgcactgaagcgcatcgtcgattattac
ccgcagatatacggcatcatcttctgccgcacccgcaaggagacgcaggagattgccgac
aaactgatgcaggagggctacaatgccgactccctgcacggcgaactgagccaggcgcag
agagacgccgtgatgcagaagttccgcatccgcaacctgcaactgctggttgccaccgat
gtggctgcccgagggctggacgtagacgacctgacgcatgtcatcaactacggtttgccg
gacgacaccgagagttacacccaccgcagcgggcgtactggacgtgccggaaagaccgga
acctccatcgccatcatcaacctgcgcgaaaagggaaagatgcgcgaaatagaacgcatc
attgccaagaagttcgagcagggagaaatgcctacttccgcacagatatgcgaaaagcag
ctgttgaaggtaattgacgacttggagaaggtgaaggtgaacgaagaagagatagatgcc
ttcatgcccgacgtttaccgcaagctggattggctgagcaaggaagacctgataaagcgt
atggcttcgcatgaattcaacaaattccttgattattaccgcgaccgcgaagacattgag
acggccacaggaaacgagcgtggcgcaaaaagcggcgcacgtggcgaacgccgcggaagc
aatggcggcaaccgtcagcccgaaaccggctacaaacggctgttcatcaatctgggtaag
atggacaacttcttccccggcgaactcatcggcctgctgaacaagaatactcgcgggcgc
atcgaactgggacgtatcgacctgatgcagaagttctcgttcttcgaagtagaagaaaaa
gaggccggcaacgtggtgaaagccctgaaccgtgccaactggaacggacgtagaatatcg
gtggaaattgccggtgaagaggggggcaacgacgcttcgagaggcggcggcaagaaagag
cgcagcggaaaaaaggagcacaacgaccagaaacgtggctataaggcaagtaaacgaaac
gatgcttcggctgcccaacgcagcgagaagctcgagaacgccacatcgggcaagaaaagc
aagcccagccgcgaagagcgcggctacaccaaagcccggggcaaaaaggacgactggaag
caattcttccaaggttacgacgacttcaaaggttctgaacccgacttcagcgaagaggga
tgggccaagcggagcaagaaaaagaaatag
DBGET
integrated database retrieval system
