Bacteroides zoogleoformans: C4H11_09660
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Entry
C4H11_09660 CDS
T05371
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bzg
Bacteroides zoogleoformans
Pathway
bzg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4H11_09660 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bzg03019
]
C4H11_09660 (rnr)
03016 Transfer RNA biogenesis [BR:
bzg03016
]
C4H11_09660 (rnr)
Enzymes [BR:
bzg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C4H11_09660 (rnr)
Messenger RNA biogenesis [BR:
bzg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4H11_09660 (rnr)
Transfer RNA biogenesis [BR:
bzg03016
]
Prokaryotic type
tRNA degradation factors
C4H11_09660 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AVM53162
UniProt:
A0ABM6T938
LinkDB
All DBs
Position
complement(2344549..2346696)
Genome browser
AA seq
715 aa
AA seq
DB search
MAKQKDKKAGKRMKKKELAKVLLDFFHNKQGEVLSLKYLFEQLRLTTHPLKMLCMNILSE
LVMDDYISEVEKHRYKLNTHGVEMTGVFQRKSNGKNSFLPDEGGDPIFIAERNSAHAMNN
DRVRIAFYAKRRGREAEGEVVEILERANDTFVGTLEVGKSYAFLVTENRTLANDIFIPKE
KLKGGKTGDKAIVKVVEWPDKAKNPIGQVIDILGKTGDNTTEMHAILAEFGLPYVYPAAV
EKAADKIPAEISAEEIAKREDFRQVTTFTIDPKDAKDFDDALSIRQLKEGLWEVGVHIAD
VTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTE
KGEVKNSRVVHTVIKSDRRFTYEEAQEIIETGKGDFKEEILQLDKLAKILRDNRFKAGAI
NFDRYEVKFEIDEKGKPVSVYFKVAKDANKLVEEFMLLANRTVAEKIGRVPKSKKAKVFP
YRIHDLPDPEKLDNLAQFIARFGYKLRTAGTKTDISKSINHLLDDIQGKKEENLIETVSI
RAMQKARYSIHNVGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTKYLDMGGRSVSEQKYED
LCEHSSNMEQIAANAERASVKYKQVEFMSERLGQVYDGVISGVTEWGLYVELNENKCEGM
IPIRDLDDDYYEFDEKNYCLRGRRKNRTYSLGDAISIKVARANLEKKQLDFALME
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcaaaaagacaaaaaagccggcaaacgcatgaaaaagaaagagcttgccaaa
gtgctgctggacttcttccacaacaagcaaggcgaagttttatccctgaaatacctattc
gaacaactgcggctgaccactcacccgctgaagatgctgtgcatgaacatcttgtccgaa
ttggtgatggacgattacatcagcgaggtggagaagcacagatataagctgaatacccac
ggcgtggagatgacgggcgtctttcaacgcaagagcaacggaaagaactcgttcctgccc
gatgaaggcggagaccccatattcatcgccgaacgaaactcggcgcacgccatgaacaac
gacagggtgcgcatcgccttctatgccaaacgccgcgggcgcgaagccgaaggagaagtg
gtggagatactggaacgagccaacgacacgtttgtgggaacgctggaagtgggcaaatcg
tacgccttcctggtgacggaaaaccgcacgctggccaatgacatcttcatccccaaagag
aagctgaaaggtggaaagacgggcgacaaagccatcgtgaaggtggtggaatggccggac
aaggctaagaaccccatcgggcaggtaattgacattttgggaaaaaccggagacaatacc
accgagatgcatgccattctggcggaattcggcttgccgtatgtctaccctgctgccgta
gagaaagccgccgacaagatacccgccgaaatctctgccgaagaaatagccaagcgtgaa
gatttccgccaagtgactactttcaccatcgaccctaaagatgccaaagacttcgacgat
gccctttctatccgccaactgaaggagggactttgggaagtaggcgtacacatcgccgac
gtgacccactacgtaaaagagggaggcatcatcgacaaggaggctgagaaacgagctacc
tcggtctatctcgtagaccgtaccatcccgatgctgcccgaacggttgtgcaacttcatc
tgctctctccgtcccgacgaagagaaactggcctattccgtcatcttcgaaatgacggaa
aagggagaagtgaaaaactcgcgagtggtacataccgtcatcaaaagcgaccgccgcttc
acctacgaggaggcgcaggagattatcgaaaccggaaaaggcgacttcaaggaagaaatc
ctccaattggataagttggccaagattctgcgcgacaaccgcttcaaggccggtgccatc
aacttcgaccgttatgaggtgaagttcgagatagacgaaaaaggcaagccggtaagcgtt
tacttcaaggtggctaaagatgccaacaaactggtggaggaattcatgttgcttgccaat
cgcaccgtggccgagaagataggacgcgtgcccaaaagcaaaaaggcaaaagtgttcccc
taccgcatacacgacctgcccgatcccgaaaaactggataatctggctcagttcatcgcc
cgctttggctacaagctgcgcacggcaggcacgaaaaccgacatctccaaatccatcaac
cacctgttggacgacattcagggcaagaaagaggagaacttgattgaaaccgtgtccatt
cgtgccatgcagaaggcacgctactccatacacaatgtggggcactacggtctggcgttc
gactattatacacacttcacctcgcccatccgccgcttccccgacatgatggtgcaccgc
ttgctgactaagtacctcgatatgggcggtcgcagcgtgtccgagcagaaatatgaggat
ctttgcgagcacagcagcaacatggagcagatagctgccaatgccgagcgtgcttcggtg
aagtacaagcaggtggaattcatgtcagagcgtctgggtcaagtttacgatggtgtcatc
tccggagtgacggagtggggcttgtacgtggaactgaatgagaataagtgcgaagggatg
attcccatccgcgacctcgacgacgactactacgagttcgacgagaagaactactgcttg
cgcggacgccgcaagaatcgcacgtacagcttgggcgatgccatcagcatcaaagtggca
cgtgccaatctggaaaagaaacaactggattttgcactgatggaataa
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