Bacteroides zoogleoformans: C4H11_13215
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Entry
C4H11_13215 CDS
T05371
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bzg
Bacteroides zoogleoformans
Pathway
bzg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bzg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4H11_13215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bzg03019
]
C4H11_13215
03400 DNA repair and recombination proteins [BR:
bzg03400
]
C4H11_13215
Enzymes [BR:
bzg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4H11_13215
Messenger RNA biogenesis [BR:
bzg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4H11_13215
DNA repair and recombination proteins [BR:
bzg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4H11_13215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
TrmB
DUF6026
Motif
Other DBs
NCBI-ProteinID:
AVM53738
UniProt:
A0ABM6TA80
LinkDB
All DBs
Position
complement(3159311..3161314)
Genome browser
AA seq
667 aa
AA seq
DB search
MNKSNFSSHPLWEKEQKEVSPCHSPYSVERQRGEAAEPELLLHQYWGYTSFRGIQKDIIS
SILTGKDTLGLMPTGGGKSITFQVPALAQEGLCLVITPLIALMKDQVQNLKKRGIKALAI
YSGMSRQEIIATLENCIFGNFKFLYISPERLDTEIFRTKVQKMKICMITVDESHCISQWG
YDFRPAYLKIAEIRQLLPGIPVLALTATATPEVVKDIQKRLNFRKENVFRMSFERKNLAY
IVRKTENKTGELLHILRRTSGSAIIYVRNRRRTKEITELLHNENITADFYHAGLDDATKD
IRQQRWQTGESRVMVATNAFGMGIDKPDVRIVLHMDLPDSIEAYFQEAGRAGRDGEKAYA
VILYAKSDSSTLHKRIPDTFPEKEYIKDVYEHLQYYYQMAMGDGQGCVREFNIEDFCRKF
KYFPVPVDSALKLLTLAGYLEYTDEQDNASRLLFTIRRDELYKLKEMDDDTDKLIQTILR
SYTGVFTDYAFINEDSLATRSGLARQQVYELLIRLAKLHIISYIPQKKTPYIIYARKRVE
KHHLQIPPSVYEERKERYEKRIAAMLDYIGNDTACRSRLLLRYFGEKNEHDCGQCDTCIS
LKRKATKDIPTKSLVENILQALSEQAMTPATLFGQLSADKEQLCNALHELLDEGQIIVVN
GMLEVKK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagtaacttttcttcccatcccctatgggaaaaagaacaaaaagaagtatcc
ccctgtcactctccctacagtgtagagcgacagagaggagaagccgctgaaccggagctt
ctcctccaccaatattggggctatacctctttccgtggcattcagaaagacatcatcagc
agcattcttaccggcaaagacactttgggactgatgcctacgggcggaggcaaatccatc
acatttcaagttccggccctcgcccaagaaggactgtgcttagtcatcacccccttgatt
gccttgatgaaagatcaggtgcaaaacctgaaaaaacgaggaatcaaggcacttgccatc
tattcgggcatgagccggcaggaaatcatcgccacactggagaactgcattttcggcaat
ttcaaatttctctatatatcacccgaacgactggacaccgaaatcttccgtaccaaggta
cagaagatgaaaatctgcatgattacggtggacgagagccactgcatctcacaatgggga
tacgactttcgtcccgcctatctgaaaatagccgaaatacgacagctactgcccggcata
ccggtacttgcactgacagccaccgctaccccggaggtggtcaaggatatccagaaacgc
ctgaacttccgtaaagaaaacgtattccgcatgagcttcgagcgcaagaatctcgcctat
atcgtccgaaaaacggaaaataaaacgggagagttgttgcatatactgcgtcgcacatcc
ggcagtgccatcatctatgtacgaaatcgccgccgtaccaaagaaatcaccgaactgctg
cataacgaaaacatcactgccgacttctatcatgccggactggacgatgcaaccaaggac
atccgccaacaacgctggcaaacaggcgaaagtcgcgtcatggttgccaccaatgctttt
ggcatgggtatcgacaaaccggatgtacgtattgtgctccatatggatttgcccgactcc
atagaagcctattttcaggaggccggtcgggcaggaagggacggagaaaaagcctatgcc
gtcatcctatacgctaaatcggacagttctactctccataagcgcattcccgacaccttt
ccggagaaagaatacatcaaggatgtatatgagcatctccaatactattatcagatggca
atgggagacggacaaggctgcgtacgcgaattcaacatagaagacttttgtaggaaattc
aaatactttcccgttcccgtagacagtgccttgaaactattgacattggccggatacttg
gaatacacagatgaacaagacaacgcttccagactgctgttcaccatccgaagagacgaa
ctctacaaattgaaagaaatggacgatgacacggacaagctcatacaaaccattttgcgc
tcctacaccggcgtgttcaccgattatgctttcattaatgaagattcgcttgccacacgc
agcgggttggcacggcagcaagtgtacgaactgcttattcgtcttgccaagctgcatatc
atcagctatattcctcaaaaaaagacaccatatataatatacgcgcgcaaacgggttgaa
aaacatcatctgcaaattccgccctcggtgtacgaggaacgaaaagaacgttacgaaaag
cgcattgccgccatgctcgattacatcggcaacgatacggcatgccgcagccgcttgttg
ttgcgctatttcggcgagaaaaacgaacatgactgcggacaatgcgacacctgcatcagc
ctgaaaagaaaagcaaccaaggatattcctacaaaaagcctcgtcgagaatatacttcaa
gcactttccgaacaagccatgacacccgccaccttgttcggccaactatcagcagacaag
gagcaactctgcaatgccttgcacgaactactggatgagggacagataattgtcgtcaac
gggatgctggaagttaagaaataa
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