Bacillus zhangzhouensis: NF868_00350
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Entry
NF868_00350 CDS
T08887
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bzh
Bacillus zhangzhouensis
Pathway
bzh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bzh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NF868_00350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bzh03400
]
NF868_00350 (mfd)
Enzymes [BR:
bzh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF868_00350 (mfd)
DNA repair and recombination proteins [BR:
bzh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NF868_00350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
CdvA
AAA_14
Motif
Other DBs
NCBI-ProteinID:
UYO35749
LinkDB
All DBs
Position
64192..67725
Genome browser
AA seq
1177 aa
AA seq
DB search
MKNIQSFIKQSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNL
YQAQKVTDDLASVMPDRSVLLYPVNELIASEIAVASPELRAQRLDVLNRLANGENPIIVT
PVAAMRRMLPPVELWKESQIHLKIGEEIDLETFSKQLVQIGYDRTSMVAAPGDFSVRGGI
IDIYALTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERVRAI
EQLDQGLAKSLKKFNSDQQKELLHQNISADREKLLEGIVTQEMTKYLSYFYEKPASLLDY
TSKDTIIILDEISRIQEMEEQLEKEEADWTISLLEEGNILHDLSLSFPFQELINQQSRSI
LYYSLFLRHVQHTNPQNIVNVSSKQMQNFHGQMNVLSSEIERYKKQQYTVVFLGADEERT
EKLSSVLHDYDIEAALAKPDAELVSGQVYILQGELQTGFELPLSKIAVITEGELFKKRVK
KQARKQKLTNAERIKSYSELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSDWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLK
GLKNGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARDGQVYFLYN
RVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTKAQDKFE
PEIDLQIDAYIPDSYISDGKQKIEMYKQFRAIGSIEERKELQDEMIDRFGEYPQEVADLF
TIATIKVYAVQERVELIKMEKGIVRLTLDEQASSKIDGQKLFELGSKYGREIGLGMEGSK
LIISVQTKGKKTEEWLEVVLSMLRGLQDVKKETIPSS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacatacaatcatttatcaaacaaagtgatgattttcagtccatttttaatggg
ctaaaggaagggttaaaagaacagctgcttgccggactatcaggctccgtcagatcttta
tttacagccgcgatatcagacgaacttaagcggccgatgtttattgtgactcacaattta
tatcaggcgcagaaggtaacagatgatctagcaagtgtgatgccggatcgctcggttctt
ctatatcctgtcaatgaactcattgcttcagaaattgcagtcgccagccctgagctgaga
gcacagcgtttagatgtcctaaatcgacttgcgaatggagaaaaccccattatcgtcact
cccgttgccgcaatgcgcaggatgcttccgccagttgagctctggaaggagagtcagatc
catttaaagattggtgaagaaattgatttggagacgttttcaaaacagctcgtacaaatt
ggttatgaccggacgtcgatggttgctgcgcccggagactttagtgtgcgcggaggaatc
attgacatctatgcgttaacggaagatcatccaatccgtattgaactgtttgatacagaa
gtagactcgattcgaacgtttcattcggatacacagcgatcattagaaacccttcaagaa
atcaaaataggtcctgcaaaagagctgattgtgagaggtcctgaacgagtgagagccatt
gaacagcttgatcaagggctggcgaagagcttaaagaaattcaactcagatcagcaaaaa
gagctacttcatcaaaatatttctgctgatcgcgagaaactgttagaaggcatcgtgaca
caggaaatgacgaagtacctgtcctatttctatgaaaaacctgctagtttgctagattac
acatcgaaggatacgattattattttagatgaaatcagcagaattcaggagatggaagaa
cagcttgaaaaggaagaagccgattggacaattagtctgcttgaagaaggcaatattctt
catgatttatcactttctttcccgttccaagaactgatcaatcagcaatcgaggtccatt
ctgtactattccttgttcctgagacatgtccagcatacaaatccgcaaaatatcgtcaat
gtatctagtaagcaaatgcagaattttcacgggcagatgaatgtgctgtcgagtgaaatt
gaacgctataaaaaacagcaatacacggttgtcttcttaggtgcggatgaagagcggaca
gaaaagctgtcgtctgttctgcatgattatgacattgaagccgctcttgctaaaccggac
gctgagcttgtaagcggacaggtatatattttacaaggtgagctgcaaacaggctttgaa
ctgccgttatcaaaaattgctgtgatcactgaaggtgaactcttcaagaaacgtgtgaaa
aaacaggcacgtaagcaaaagctgaccaatgcagagcgaatcaagagctattcagagctt
caagtcggcgattatgtggtgcacattaaccacgggatcggtaaatatttaggaatagaa
acactagaaatcggcggcattcataaagattatttaaatattcattatcaaggaagcgac
aagctttatgtaccggttgaacaaattgatcaggtgcagaaatatgtaggatcagaaggt
aaagaaccaaagctgtacaaacttggcggcagcgattggaaacgcgtgaagaaaaaagtt
gaaacatctgtacaggacatcgcagatgatctgattaagctgtatgcagaacgtgaggca
agcaaaggatatgcgttctcacctgatcatgagatgcagcgtcagtttgaatctgcattc
ccttaccaggaaacagatgatcaaatccgttcgattcacgagattaaacaggatatggag
cgggaacgtccaatggaccgtctgctttgtggagatgtgggttacggaaaaacggaggtg
gcgattcgtgcggccttcaaagcgattgctgacgggaagcaggtagccctgcttgttccg
acaaccatcttagcgcagcagcattttgacacaattatggaccgattccaagactatcct
gtcaaaatcgcgcagctgagccgtttccgtacaagaaaagaaacaaccgaaacgttaaaa
gggctgaaaaacggaacgattgatatggtcatcggcacacaccgtcttctttcaaaagac
attgtctataaggatttagggctgttgatcattgatgaggaacagcgttttggtgtgacg
cataaagagaaaattaagcagatgaaagccaatatcgacgtactgacattaactgctacg
ccaattccgcgtacacttcatatgtccatgcttggtgtaagggatttatcggttattgaa
acaccgcctgaaaaccggttccctgttcaaacctatgtagtcgagtacaatggcgcttta
gtcagagaagcgattgagcgagaattagcacgcgacggtcaagtgtacttcctttacaac
cgtgttgaggatattgaacgaaaagcagatgaaatctccatgctagtcccagacgcaaaa
gtcagctacgcccacgggaaaatgagtgagaacgaactggaatcagtgatgattaatttt
cttgaaggtgaatcagatgtattggtcagtaccaccatcattgaaacgggagtcgatatt
ccaaatgtgaacacactcatcgtccacgatgcggataaaatggggctttctcagctgtat
cagctaagaggacgagttgggcgttcgaaccgtgtcgcttatgcttatttcacgtatcga
aaagataaagttctttctgaagttgcggagaaaagacttcaagccattaaagaattcaca
gagcttggatctgggtttaaaattgcgatgcgtgatttaacgattcgaggagcagggaac
ttacttggtgctcagcagcatggtttcattgattccgttggattcgacctctattctcaa
atgctgaaagaagccattgaagaaagaagaggcgatacaaaggctcaagataaattcgag
ccagaaattgatctgcaaattgatgcttacatcccggacagttatatttcggatggcaag
caaaagattgaaatgtataaacagttcagagcaattggatcaattgaagaacgaaaagag
cttcaggatgaaatgatcgaccgatttggtgaatatccgcaagaagtggctgacttgttt
acgatagcaacaatcaaggtgtacgctgtacaggaacgtgtcgagctgatcaagatggag
aaaggcattgtcagactcacccttgatgagcaagcaagcagtaaaattgacggtcaaaaa
ttatttgagctcggcagtaaatatgggcgtgaaattgggttaggaatggaaggcagcaag
ctgattatttctgtccaaacgaaaggcaagaaaacggaggaatggcttgaggttgttctt
agcatgcttcgaggccttcaagatgtgaaaaaagaaaccattccatcttcataa
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integrated database retrieval system
