Bacillus zhangzhouensis: NF868_06260
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Entry
NF868_06260 CDS
T08887
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bzh
Bacillus zhangzhouensis
Pathway
bzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF868_06260 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bzh03019
]
NF868_06260 (rnjA)
Messenger RNA biogenesis [BR:
bzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NF868_06260 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
UYO36776
LinkDB
All DBs
Position
complement(1235471..1237138)
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AA seq
555 aa
AA seq
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MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLKQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLH
IFEEEDTIKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPEFTMSERRVGESIDDIFRKVDGRIIFATFASNIHRLQQ
VIESAVANGRKVAVFGRSMESAIDIGQDLGYIKCPKNTFIEHNEINRLPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNNISVSRTINQLYRAGAEVIHGSL
NNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKTHIKLANDCGIPEENCFIMDNGE
VLALKSDEASIAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSMDMKEFKI
SAGPDLISRGFVYMRESGDLIKDAQDLISKHLEKVMERKTTQWSEIKNEITDTLAPFLYE
KTRRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaacgatcaggcggcagtttttgcgctcggcggtttaggcgagatc
ggtaaaaacacgtatggcgttcaatttcaagatgaaatcattttaattgatgctggtatt
aagtttcctgaagatgaacttcttggaattgactacgtcatccctgactatacgtactta
gttaaaaacgaagataaaatcaaaggtcttttcatcactcacggacatgaagaccacatc
ggcggtatcccttaccttctcaagcaagtaaatattccagtttacggcggcaaactcgca
atcggcctacttcgtaataaattggaagagcatggtctcttgagacaaacaaaacttcac
atttttgaagaagaagataccattaaatttagaaaaactgctgtgtctttctttagaacc
actcacagcatcccagattcttatggaattgtcgtcaagacacctccgggtaacatcgta
catacaggtgatttcaagtttgactttactcctgttggcgagcctgccaatttaaccaag
atggctgagatcggaaaagaaggggttctttgtcttttatctgatagcacaaacagtgaa
atcccagaatttacgatgtctgaaagacgcgtaggtgaaagcattgatgacatctttaga
aaagtcgatggacgtatcatctttgccacgtttgcttcaaacattcacaggcttcagcaa
gtgattgagtctgctgttgccaacggcagaaaagttgctgtatttggacgcagtatggaa
tctgctattgatattggacaagatcttggctatattaaatgcccaaaaaacacgtttatt
gaacataatgaaatcaaccgccttccagcaaacaaagtgacaattctttgtactgggagc
cagggtgaaccgatggcagccctttctcgtattgcgaacggtactcaccgccagatttcc
attaatcctggagacactgttgtcttctcatcttcaccgatcccaggtaacaatattagc
gtgagccgcaccattaaccagctttatcgtgcaggcgctgaggtcattcatggctcgctt
aataatattcatacatctggtcacggcggacaagaagaacaaaaactcatgctccgttta
attaaaccaaaattctttatgccgattcacggtgaataccgcatgcaaaaaacgcatatc
aagcttgcaaatgattgcggcattcctgaggaaaactgctttattatggataacggtgaa
gttcttgcactgaaaagtgacgaagcaagtatcgctggcaaaattccatcaggcaacgtg
tatatcgatggaagcggtattggcgatatcggaaacatcgttttaagagaccgccgcatt
ctttctgaagagggtcttgtcattgtggtcgtcagcatggacatgaaagaattcaaaatc
tctgctgggcctgatttgatctcaagaggttttgtctacatgagagaatctggagacctt
atcaaagatgcacaggatttaatttcaaagcatcttgaaaaagtaatggaacgtaagaca
actcagtggtctgaaattaagaacgaaattacagatacccttgcacctttcctttatgaa
aaaacaagacgccgcccaatgatcttaccgattattatggaagtgtaa
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