Coraliomargarita akajimensis: Caka_0138
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Entry
Caka_0138 CDS
T01204
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caka_0138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caa03019
]
Caka_0138
03400 DNA repair and recombination proteins [BR:
caa03400
]
Caka_0138
Enzymes [BR:
caa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Caka_0138
Messenger RNA biogenesis [BR:
caa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Caka_0138
DNA repair and recombination proteins [BR:
caa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Caka_0138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ADE53167
UniProt:
D5EL65
LinkDB
All DBs
Position
complement(173607..175523)
Genome browser
AA seq
638 aa
AA seq
DB search
MPASNAPLDVLQSQFGFDAFRSGQEAVIGTLMEGRSAAAIFPTGSGKSLCYQLPALLLPG
LTLVVSPLLALMKDQIDSLQARGIAAERLDSSLDEEDYRRVTQDIRGGSLKMLFVAPERL
GNERFINLIHKQRISLLAVDEAHCISSWGHNFRPDYLKLASAAKELQVERVLALTATATP
QVANDMARAFDIAADDIVNTGFHRPNLELRVTSCSDAERPDLLVQRLKERPAGPTIIYVS
LQKHAEEVAEHLVNAGFDAKAYHAGMKSEQRVATQDAFMRGEVPIICATIAFGMGVDKSD
IRYVYHYHMAKGYESYMQEIGRAGRDGKPSICELFACADDCTTLENFVFGDTPDPESIRS
IVTELLGSGDEIDIAINDLSRRHDIRQLVVNTLLTRLELKGIIRSEGHYYGSIRFAPKGS
SAEILAHYPDNQAAFIRKIFACCSKARKWISLDIDKAIEHTGQQRSVILRALDSLQDKGL
AELQLAGYRQRFRLLQQDVDLPALCAELEATFLQHEQMEIDRIESMLRYAQSNSCLTAKL
LDYFGESIEPCGHCGICLDDAPAQVPTRQHASMDRIDLSGFDALVAQNPSALARPRQQAR
FLCGLNSPAVSALRGLRGNPHFGSCAEVAFADVLDGRL
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcctccaacgccccactcgacgtcctccaatctcaattcggtttcgatgcgttc
cgctctggtcaggaagcagtcattggcacactaatggagggacgcagcgcggccgcgatt
ttcccgacgggatcgggcaagagtctctgctaccaactgccagcgctcctgttaccgggc
ctcacgctagtcgtctctcccctgctggccttgatgaaggatcagattgacagcttgcaa
gcgcgcgggatcgcggccgaacgactggattccagcctcgacgaagaagactaccggcgc
gtcacccaagacatccgcggtggcagcttaaaaatgctctttgttgccccggagcgcctt
ggcaatgaacgcttcatcaacctcatccataagcagcgtattagtctgctcgcagtcgat
gaggcgcactgcatctcgtcttggggacacaactttcgcccggactatctgaaactcgcc
agcgccgccaaagagctgcaagtcgaacgcgtgctcgcgctcaccgcaacggccacgccg
caagtggccaatgatatggcgcgtgccttcgacattgccgcagacgacatcgtcaacacg
ggctttcaccgccccaacctcgaactacgtgtcacgagttgctccgatgcggaacgtccc
gacttactggtgcaacgcctgaaggagcggccagcaggcccaacgattatttatgtgagt
ctgcaaaaacatgccgaagaggtcgccgagcatttagtcaacgcaggcttcgatgccaaa
gcctaccatgcgggcatgaagtctgagcagcgagtcgccacgcaagacgcctttatgcga
ggcgaggtgccgatcatttgtgccacaatcgccttcggcatgggggtcgataaatccgac
atccgttacgtctaccactaccacatggcgaaaggctacgagagctacatgcaagagatc
ggccgcgctggccgtgatggtaagccctcaatctgcgaactgtttgcctgtgccgacgac
tgcaccacgctggaaaatttcgtctttggcgacacgcccgatcccgaaagtatccgctca
atcgtcaccgaactactcggctccggcgacgaaattgacatcgccatcaacgatctctca
cgccgtcacgacattcggcagctggtcgtcaatacgctcctcacccgattagagctcaaa
ggcattatccgctccgaaggtcactattacggcagcattcgctttgctccgaaaggaagt
agcgccgaaatcctcgcgcactacccagacaaccaagccgcgtttatccgtaagattttt
gcctgctgcagcaaggcgcgcaaatggatcagcttggacatcgacaaagcaatcgaacac
accggccagcagcgcagcgtcatcctccgcgcactcgatagcctgcaggacaaaggcctc
gccgaactccaactagcgggctaccgccagcgttttcgcctcctgcaacaagacgtcgat
cttcccgcactgtgcgctgagctcgaagccaccttcctgcaacacgagcaaatggagatc
gaccgtatcgaatcaatgctccgctatgcgcaaagcaacagctgcttaacggcaaaacta
ctcgactattttggcgaatcgattgagccctgtggccactgcgggatttgcctggacgat
gcgcctgcccaagtgccgacacgtcaacatgcgagcatggatcgcatcgacctcagtggc
tttgatgcactggtcgcacaaaacccgtcagcactcgcgcgtccccgacagcaagcacgc
ttcctctgcggcctaaactcaccggctgtctctgcccttcgtggcctccgcggtaatccg
cacttcggcagctgcgcagaagtcgcctttgcggacgtgctggatggaaggctttag
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