Coraliomargarita akajimensis: Caka_0195
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Entry
Caka_0195 CDS
T01204
Name
(GenBank) Exodeoxyribonuclease V
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Caka_0195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caa03400
]
Caka_0195
Enzymes [BR:
caa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Caka_0195
DNA repair and recombination proteins [BR:
caa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Caka_0195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ADE53222
UniProt:
D5ELP7
LinkDB
All DBs
Position
242105..245515
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AA seq
1136 aa
AA seq
DB search
MPLHLVESTHQEQLAETLVRNLASSERVTDRLEATAVIVQNAGLGRWLRLWHAKRCGISA
AVTMPFAQSFIAKELERLGLFDRWQELSPTLLRWQIFDLLQSREFEHWSDAGPLSAYLGL
EHRAVERRCWALAGRLANLFDRYAVHRPEWIEAWVASEQGDVSLPHWNWQAQLFRSVLER
LGLSSADLSRRLIGRAVQAYLVADEPGQSRDDSAVHVFGIGSFPPAFLRFFQRLSVSREV
YLYHLVPSEAYLGELPKNYRATLLTELEGGELGADADQWLQNSLLIANGQAAARFQSLLL
SMDLPTGELPVVEELAARSDLQHLQNAVRLNEPYCEFNADGSLSLHQCHSRIREVQVLQQ
QLLAQFEADPDLRPEDILVLVPEISDYTDAIQSVFGMGTRVHAGRDPIKLPYCIADQKNS
GDESCWRFFTALLRLMKGRQLFSEVIALLDFDPVCRRLGLDRELLKELASLLQSVGVRWG
INQASRVSKGLPEYEAYSWEHGLQRLYDGLIYGEWSPKDCASGLNSAHLQESIGSLTQFL
RPVFDLAQRDSEQHSFKDWAELLLSVLRQTLGEGHESGEWMRLLAVEIGELQLHASDVTI
RFDTFCTMLEEGDLSTAGPSGLLRRGITFCRLQPARHIPAKVVCILGLDEGSYPRQERGL
EFDLIDLQRRHAKALAKTSLRYQEIHYLGDVHIRDADRQLFLDCILNARQRLYLSYVGQS
DQNNEDLPPSLLLNELKQFLERVPDPADEKQVAERRLGLARACVRHPLQDWSIHNFEHPT
MQLGEPPVPVHFNSQYARIDRQSVSVARFLEPVAVALPEHEHADQLTGEQLLRFLKDPAD
YYLKQQLHVNLEQLSWLETHEDQEALELDALGHWELRARVFDAWCLAKQQGHVSERFMDE
LKRRWQLDLTLPLGHGGESVWNRQVLPVLNFLNTLLGDAELRRGRLSLELAAVRFQNTYW
ETSRGERLVFVHGGLDQAKNLLHAFIQHIGAEHGSLIVNLKECRCESWPSFSECADGLDN
SGVEWLSTVVSLWQKGLKAPLAFSLEIGKAYVADSTPANDQVASELLTTAYQKNWIKHTG
YGQDCSPAQCLCFDDDSPASPNAAPELREAFAANAECILRPVLDWLEQVNVQKGEQ
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttcaccttgtcgaatccacccatcaggaacagcttgctgagaccttggtgagg
aatctggcctcatccgagcgagttactgatcgattggaggcgacagccgtcattgtacag
aatgccgggttggggcgctggttacggctttggcatgcgaagcgctgtgggatttcggct
gcggttacgatgccttttgcgcagtcatttattgcgaaggaattggagcgtctgggcttg
ttcgatcgctggcaagagttgtcgccgactcttttgaggtggcagatctttgatttactg
caatcccgtgaatttgaacactggtcggatgcagggcccctgagtgcgtatttgggactc
gagcatcgcgctgtcgagcgtcgttgttgggcgcttgccgggcgacttgcgaatctattt
gaccgctatgcggtgcaccgaccggaatggattgaggcatgggttgccagtgagcagggg
gatgtcagcctacctcactggaactggcaagcgcagctgttccgttcggtactcgagcgg
ctcggactgagtagcgcggacctctcgcgtcgtttgattggtcgagcggtacaggcctat
ctggtagcggatgagcctggtcagagccgagacgattcagctgttcatgtttttggtatc
ggttcctttccacccgcatttttgaggtttttccagcgtctgtcggtgtctcgagaggtg
tatctgtatcacttggttccaagtgaggcgtatttgggggagttgccgaagaattaccgt
gcaactttattgaccgaactggaaggcggtgagttgggagcggacgcggaccaatggttg
cagaattcattactgattgcgaatggacaggctgcagcgcgcttccagtctcttctgttg
tcgatggatctcccaacgggtgagttgcctgtggtggaagagttggcggcgcgctctgac
cttcagcacctacagaacgcagtgcgcttgaatgagccgtattgtgagttcaatgcggat
ggcagtttgagtttgcaccaatgtcatagccgtattcgtgaagtccaggtgttgcagcag
caactattggcccagtttgaagcagaccccgatttacgtcccgaggatattttggtgctg
gttccggagattagtgactacacggatgccattcagtcggtctttggcatggggacgcgt
gtgcatgccggcagggatcccattaagctgccatactgtatcgcagaccaaaaaaactcg
ggtgatgaaagctgctggcgcttttttaccgccttgttgaggttgatgaaggggcgtcag
ctcttttcggaagtgatcgctcttttggattttgatcccgtgtgccgacgacttggcttg
gaccgtgagttgctcaaggaacttgccagtttgttgcaatcggttggcgtgcgttggggc
atcaatcaggcaagccgtgtatccaaaggtttgcccgaatacgaagcgtattcttgggag
catggcttgcaacgactctatgacggactgatctacggagagtggtcacctaaagattgt
gcgtcgggtcttaattcggctcatctgcaggaatcgattggtagcctgacacagttcttg
cgtccggttttcgacttggctcagcgcgatagcgagcagcatagtttcaaggactgggcg
gaactgttgttgagtgtcttgcgacagacattaggcgaaggccatgaaagtggggagtgg
atgcgtctgctcgctgttgagattggcgagctgcaattacatgccagtgatgtgacgatt
cgctttgataccttttgtaccatgttggaagaaggggatttgtcgaccgcaggaccctcc
ggcttattacgtcgtggaatcactttttgtcgcttgcagccggcgcgtcacattccggct
aaggtcgtctgtatcttaggtttggatgaaggttcgtatccgcgtcaggagcgaggcttg
gagttcgatttgatcgacttgcaacggcgtcatgccaaggccttagccaagacttctttg
cggtatcaggaaatccactacttaggagacgtacatatacgcgatgccgatcgtcagttg
ttcttggattgtattctgaatgcccgccagcgtctgtatctgagctatgttggacagagt
gatcagaataatgaagatctaccaccgtctctgttgctgaatgaactgaagcaatttctt
gagcgtgttccggatccggctgatgagaagcaagttgctgagcgcaggctcgggcttgcc
cgtgcgtgtgtgcgccatccattgcaagactggagcatccataattttgagcatccaacg
atgcaactcggtgagccaccagtgccggtgcatttcaattctcagtatgcgaggattgat
cgccagagtgtttcggtggcacgatttttagagcctgtagcggtggcattgcctgaacat
gagcacgcggatcagctgaccggagagcaattgctacgttttctcaaggacccggccgac
tattatttgaagcagcagcttcatgtgaacttggagcagttgagttggcttgaaacacat
gaagatcaagaagccctggaattagatgccttaggacattgggaattacgcgcacgtgtc
tttgatgcgtggtgcttagccaaacagcaggggcatgtgtctgagcggttcatggatgag
ttgaaacgacgttggcaactcgacttgacgctaccactcggtcacggcggagagagcgtt
tggaatcgtcaagttctgcccgttctgaatttcttgaatacactgcttggtgatgcggaa
ttacgcaggggccgtctctcactggaactcgctgcagtacgctttcagaacacctattgg
gagacgagtcgcggtgagcgtttggtttttgttcacggcggtttggatcaggcaaagaat
ttgttgcatgccttcattcagcatataggcgccgagcacggtagcttaatcgtcaacctt
aaagagtgtaggtgtgagtcgtggcccagctttagtgaatgtgcggacgggctagacaac
tcaggagtcgaatggttgtccacggtcgtttccttgtggcagaagggtttgaaagcgcca
ttggcattttcattggagattggcaaagcctatgttgcagactcgaccccagcgaacgat
caggtggcatcggagttgttgacgacggcttatcaaaaaaactggataaagcatacaggc
tatggtcaggattgttctccagcgcagtgtctgtgctttgacgatgattcgcctgcatcg
cccaatgctgcgccggagcttcgcgaggcgtttgcagcgaatgccgagtgtattctaaga
cctgtgctcgactggctcgaacaggtgaatgtgcagaaaggagaacaatag
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