Coraliomargarita akajimensis: Caka_0196
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Entry
Caka_0196 CDS
T01204
Name
(GenBank) Exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Caka_0196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caa03400
]
Caka_0196
Enzymes [BR:
caa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Caka_0196
DNA repair and recombination proteins [BR:
caa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Caka_0196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
ResIII
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADE53223
UniProt:
D5ELP8
LinkDB
All DBs
Position
245493..249098
Genome browser
AA seq
1201 aa
AA seq
DB search
MCRKENNSMGDQPYMDAPQQLEVSSFELESGTTLIEASAGTGKTYTIQYIVLDLLLKGLS
LPEILVVTFTEAATKELSDRLQSFLVEVNQTLSGNGTENAALESVLNRASRRTGAACVRR
CIHRAMLEVDQAAIYTIHGFCQRALQENAFAADASFDTELCADVTPIVDELVLDFLRRVQ
LEMPIAPPAEASLTKLRGRALQLTGVLRHREPFQGEIGSVGATLSEVVRDIQLLAAEADA
IVDEFRSYQGQLNGATYKADFFDRFESLLSSILDDPLSSNAKDLNKLSACTIQAKFKRDF
KGTELRSPFFKACERLLAEQGRYGDDFLQCFDSWFIESFQHLKAERGFMTYDDMIFDLDR
ALSRSGRLKRQLCERYRAALVDEFQDTDGRQYSIFRKLFAESTEHGRYFAMIGDPKQSIY
GFRGADISAYLKARNAAHYRYTLPMNYRSEKSVVDATNRFFQGGDLGKVLGSNEDESILF
DTVDANDTPKRRLCFAGKVQPDRLYERALPRPIDERVKSAHQSSVTAMAEDVERLLVLSE
EGRVYFESTEMGLSRERVRASDIAVLVNTNREAAEVQDELHKRGIVAVRSKTGSILETAE
AQNFLYFLMACLDPSERGINLLLISSLFAKNDAELRLLSSSERRAIYELFRLLGKQWRDG
AAVSRIWMRFVDERFLREHLLQRTDGERELTNYMHIAELAQELERVERLSPDRLRDRLWE
TIQNGSNSSLSDDYLVRLESDAAAVTIMTMHSSKGLEFPIVFLPTLWQRGINQRSKREPQ
LKTDPKDPDCFVGFEVDAAQVVASSSSENLRLGYVAMTRAVHFSVYYNVRGLPKQHGASN
QADGWFDQWLCDQRDGRYPNEAEEDFLGELRCVSPVELTDTTSPEEVHVHELTRAIPTSY
QITSYSALARSEHKEQDFDPSTRSGMEDAPREDRLSRSLAGDLSSVESDLLLEAFPGGVR
TGTCIHEVLERCDFTQPETWQRLAHAVISRHFPDGGDDSLEERVSQLVELLTTLTAQVRS
SSAGLNIDLAKLSPSACIPEMEFYFPVEQVDLAGLEAVLRTWAERVGFEYNSAEYRARDI
DGYLTGSVDLFFTQAQRFFILDWKTNRPLRRHLPLRSSYDRPGMHAHMEHGRYYLQALIY
SVAVSTYLRQRLGDRFDWESHMGGFVYCFVRGLGEGSGWHHEAFSEAEVRAASKALGQLN
E
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagaaaggagaacaatagtatgggagaccagccatacatggatgcgccacagcag
ttggaggtctcaagctttgaactcgagtccggtacgaccttgattgaagccagtgctgga
acgggcaaaacgtatacgatacagtacatcgtactggatcttttgctcaagggcttgagc
ctacctgagatcctagtggtcacgtttacggaagcggccaccaaagaactcagtgatcgc
ttgcaatccttccttgtggaggtcaatcaaaccctatcgggaaatggtacggagaatgcg
gcattagaatccgtattgaatcgagcgagtcggcgaaccggagcagcctgcgtgaggcgt
tgcatccaccgagcgatgcttgaagtggaccaggctgcaatttatacaatccacggcttt
tgccagcgtgctttgcaggagaacgcgtttgccgcggatgctagttttgatactgaactg
tgtgctgatgtgactcccatcgtggacgaactggttttggatttcttgcgtcgtgtgcag
cttgaaatgccgatagctccgccagcggaggcgtcgctcaccaagttgcgtggtcgtgca
ctgcagttgacgggagtgttgcggcatagagaaccttttcaaggagagatcggatcggtg
ggggccactctgagtgaagtcgttcgggatatccagttgctcgctgcagaggcagacgcg
atcgtagacgagtttcgtagctatcaaggacaattgaatggagcgacttataaggctgat
ttctttgatcgttttgagtcgctgctgagctcgatactggatgatccactttcttcaaat
gcaaaggacttgaacaaactgtcggcgtgtacgatccaagcaaagttcaagcgagacttt
aagggaacggaattacgcagtcctttttttaaggcatgtgagcgcttgttggctgaacag
ggacggtatggcgacgactttctgcagtgctttgatagctggttcattgagtcctttcag
cacttaaaggcagagcgaggattcatgacctatgatgacatgatctttgatttagatcgt
gcgctcagtcgttcgggccgactgaagcgacagttgtgtgagcgttaccgtgcggcgttg
gttgatgagttccaagatacggatggacgtcagtattcgatcttccgaaaactcttcgct
gaatcaactgagcatggacgttatttcgcgatgattggtgatccgaagcaatcgatctac
ggctttcgaggtgcagatatctcggcttatttgaaagcacgtaacgcggcacactatcgt
tacaccttaccgatgaattatcgttccgagaagtcggttgtagatgccacgaaccgtttc
ttccagggaggggacctgggcaaagtactgggttcaaatgaggacgaatcgattctgttc
gatacagtcgatgccaatgacacgcccaagcgacgtctgtgctttgcggggaaggttcag
cctgaccgactctatgaacgcgctttaccacgtccgatcgatgaacgagtgaagtccgct
caccagagtagcgtcactgcaatggctgaggacgttgagcgcttgctagttctatccgag
gaggggcgtgtttattttgaatcaacggagatggggctaagccgagaacgcgttcgtgcc
agcgatatcgcagtattggtgaataccaatcgagaggcagctgaggtgcaagatgagttg
cacaagcgagggatcgttgcggtgcgtagcaaaacaggatccattctggagacggcagaa
gcgcagaactttctctactttctaatggcttgtttggatccgagcgaacgtggcattaac
ttactgttgatcagttcactgttcgcaaaaaacgatgcggagctacgtttgttgtcgagt
tccgagcgtcgtgcgatctatgagctctttaggctcttgggaaagcaatggcgcgatgga
gctgcagtgagtcggatttggatgcgttttgtcgatgagcgttttttacgtgagcacttg
ctgcagcgaacggacggtgagcgtgaactcaccaattacatgcacattgcagagcttgct
caggagctggaacgggttgagcgcttgagtcctgatcgtttgcgagatcgactttgggag
accattcagaatggttcgaacagttcgttgagtgatgattatctcgttcgtttagagagt
gatgcagcggcggtaacgatcatgacgatgcacagttcgaagggactggagtttccgatc
gttttcttgcccaccctttggcagcgggggatcaatcagcgcagcaagcgcgagccacag
ttgaaaacggatcctaaggatccggattgcttcgttggttttgaagtcgatgcagcgcag
gttgtagcgtcgtcgagttcagagaatttgcgcttgggctatgtcgcgatgacgcgtgcg
gttcatttcagtgtttattataatgtccgtggattaccgaagcaacatggtgccagtaac
caagctgatggctggtttgatcaatggctttgtgatcaacgtgacggacggtatccgaac
gaagcggaagaggattttctcggcgaactgcgttgcgtcagtccggtcgagttgaccgat
acaacgagtcctgaggaggtacatgtccacgagcttacgcgcgcgatccctacctcgtat
cagatcacttcatacagtgcactcgcacgcagtgagcacaaagaacaggatttcgatccg
tccacccggagcgggatggaagacgctccgcgggaggatcgccttagtcgaagtttggcc
ggagatttgagctcggtggaatctgatctgttgctcgaagcgtttccgggcggagtgcga
accggaacctgtattcatgaggtattggaacgttgtgattttactcagccagagacttgg
caacgtttggctcatgcagtgatttcgcgacactttccagatggtggtgacgacagtctg
gaggaacgggtgagtcagctcgtagaattattgacgacgttgaccgcgcaggttcgctcg
agttcagcgggactgaacattgatttggcaaagttgagtccgtcggcgtgcattccagag
atggagttctacttcccggttgagcaagtagatctggcaggcttggaagcggtgttgaga
acttgggccgagcgtgttggctttgagtacaattccgcagagtaccgtgcacgagatatc
gacggctacctgaccggaagtgtcgatttgtttttcactcaggcacagcgcttctttatc
ttggactggaaaaccaatcgtcccttaagacggcatttaccgctcagatcgagttatgat
cgcccagggatgcatgcgcacatggagcatggccgctactatttgcaggctttgatctat
tcggtcgccgtctcgacctacctgcgtcaacggcttggcgatcgttttgattgggagagt
catatgggtggattcgtttattgctttgtgcgtggactgggcgagggcagcggctggcat
cacgaagccttctcggaggccgaagtacgtgcggcgagtaaggcattgggacagctaaat
gagtga
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