Coraliomargarita akajimensis: Caka_0684
Help
Entry
Caka_0684 CDS
T01204
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03420
Nucleotide excision repair
caa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Caka_0684
03430 Mismatch repair
Caka_0684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caa03400
]
Caka_0684
Enzymes [BR:
caa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Caka_0684
DNA repair and recombination proteins [BR:
caa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Caka_0684
MMR (mismatch excision repair)
Other MMR factors
Caka_0684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DUF7089
ADDB_N
AAA_11
Terminase_6N
DUF1217
nSTAND_NTPase5
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADE53708
UniProt:
D5EPH1
LinkDB
All DBs
Position
complement(886245..888242)
Genome browser
AA seq
665 aa
AA seq
DB search
MFDETESFSSAFAPIDFRAELNDEQYAAVTADPGPALVLAGAGSGKTRTLTYRVAYLLHA
GVQAHEILLLTFTNKAAREMLERVEDLTAVSRRQLWGGTFHSIAQRILRQHGEHIGLKRH
YTILDESEAESLLKNAINAVDPKFIKGKNNPKPKVVANMISYARNTCRSVYEEADDHFPF
LDDMAQKIADIYTKYQAMKLEQQVVDYDDLLELLLKLLREHPDVAAIYQQRFKHILVDEF
QDTNRLQSEIVDLIGVNHQIMAVGDDAQCIYTWRGADFDNIMRFNDRHPEAQIHKIETNY
RSTPEILDYANAVLGNQPAGKGYFKELRPVKESGAKPYFVPIMDARGQAQFIIQRISALV
DEGHNLSDIAILYRAHYHAMDLQMELSRQNIDYQITSGVRFFEQAHIKDFSAQLRFASNP
ADVSAFARFTTLLPKIGPKSAERIHAFTKSLAEKEQTNFCDMLTSEAVLKKVPNDAKEEW
PSLAETIRELSNALSEQRPSDVVQLGLDGWYGSYIREIYPNWTEREDDLQSLISFASRYE
TMEELLAQLVLLASESNERGPDELKHCLRLTTIHQAKGLEFPIVFVIGLADGLFPLQRTI
DDGDLEEERRLYYVAVTRAMDELYLSYPMLNQKGNSVMRMNPSRFVQEIDTSRYETLRVA
PTRSW
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgagaccgagagtttttccagtgccttcgcccccattgatttccgcgccgag
ctcaatgacgagcaatatgctgccgtgactgccgatccggggcccgcactggttctggca
ggcgctggatcgggaaagacccgaaccctcacctaccgagttgcctacttgctgcacgcg
ggtgtgcaagcgcatgagattcttttgctcaccttcacgaacaaagcagcacgtgagatg
ctcgagcgcgtcgaagacctcactgccgtctcccgtcgccaactctggggcggtaccttc
cacagtatcgcacaacgaatcctgcgccagcacggcgaacatatcggcctaaagcgtcac
tataccattctcgacgaaagcgaagcagagagcttgttgaagaacgcgatcaacgcggtt
gaccccaaattcatcaaagggaaaaacaatccaaagcccaaggtggttgccaacatgatc
agctatgcgcgcaacacttgtcgctcggtctatgaagaggccgatgatcacttcccgttt
ttggatgatatggcgcaaaaaattgccgatatctacactaagtatcaagcaatgaagctg
gaacagcaggtggtcgactacgacgacttgctggaactcttgctcaagctgttgcgtgaa
cacccggatgtcgcggcgatctatcaacaacgcttcaagcacatactcgtggatgagttt
caagataccaaccgtctacaatccgagatcgtcgatttgatcggtgtgaaccatcagatc
atggctgtcggtgacgatgcccaatgtatctacacctggcggggggcggactttgacaac
atcatgcgtttcaacgaccgacatccagaagcgcaaattcataagatcgaaaccaactat
cgcagtactcccgagatcctggactatgccaatgcggtgctgggcaaccaaccggcaggt
aaaggctatttcaaagaattgcgccccgtcaaagagagcggtgcaaagccctatttcgtt
ccgatcatggacgctcgtggccaggcgcagttcatcatccaacggatttctgctctggtc
gacgaaggccacaacctctcagacatcgccattctctaccgcgctcattatcatgcaatg
gatctgcagatggagctctctcgccagaatattgattatcaaatcaccagcggtgtccgc
ttcttcgagcaagcacacattaaggacttcagtgcgcaactgcgcttcgcctctaatcca
gcggatgtttccgcgtttgcacggttcaccacgctactacccaagattggaccgaaatcc
gctgaacgcattcatgcctttacgaaaagcttagctgaaaaggagcaaacgaatttctgc
gacatgctgacgtcggaagcggtcctgaagaaagtgcccaatgatgccaaagaagagtgg
ccttcccttgctgaaacgatccgcgaactctcgaacgcactcagcgagcagcgtccaagt
gatgtcgtacaattagggcttgatggctggtatggctcctacattcgcgagatctatcca
aactggaccgagcgcgaagacgatctgcagagcttgattagtttcgccagccgttatgag
accatggaagagctgctggctcagttagtcctgttggcttcggagagcaatgagcgcggg
cccgacgaactcaagcactgcctacgcctgaccacgattcaccaagccaagggacttgag
tttcctatcgtgtttgtcatcggcctagcagacggtctcttcccacttcaacgcaccatc
gatgacggtgatctcgaagaagaacggcgcctgtactatgtcgcagtgactcgagccatg
gacgagctctacctcagctaccccatgctcaatcaaaagggcaacagtgtcatgcgtatg
aatccaagccgcttcgtacaggaaatcgacaccagccgctacgaaaccctgcgtgtggct
ccaacacgatcctggtga
DBGET
integrated database retrieval system
