Coraliomargarita akajimensis: Caka_1517
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Entry
Caka_1517 CDS
T01204
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
caa
Coraliomargarita akajimensis
Pathway
caa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Caka_1517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caa03021
]
Caka_1517
Transcription machinery [BR:
caa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Caka_1517
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HC2
Phasin_PhaP
Thg1
Motif
Other DBs
NCBI-ProteinID:
ADE54536
UniProt:
D5EJD7
LinkDB
All DBs
Position
1890260..1892179
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AA seq
639 aa
AA seq
DB search
MSAAKKTTAKKTAAKKAPAKKVAKKTATKAKKATKKAATKKAAAKKAPAKKVAKKAVEED
AIDEVVIPKPRKRRLSAKAQEKLNEKIRGLIRMSKEQGFLTYKDINKGLPESVNNPEEIE
NVISILQNLEIEVLDDSQVEAYKARQEETEEKEVRTSQNDILDDPVRMYLKQMGQVPLLT
REEEVAISKRIEKAELRAQDALFSTALTLEFQNDVVQKLLNREERFDRVVLDKKIESREA
YFNSLPKLLEDAHKLGDRIYSAWDSMEEAAAAGNETNRKRARTRMKKYEAELSGVLKKYC
LKLKIFEDFLKDLTPTYMELKELYDDLETADKVTARRRKQVDVKAIERRLEEIKLEFKIE
SKELLDIIREVRIGTREAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMK
AVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEL
GHEPTAEEVADEMNLPIERVQSIMKMAQQPISLQSPVGDSDDTNFGDFIEDKGAENPYDM
TAYSLLREKITDVLDSLTERERRVLSLRFGLADGYSRTLEEVGRQFKVTRERIRQIEAKA
LRKMRHPTRIRQLHGFFEGDINLDKPGMDSLKREMAKEK
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcgaaaaagaccaccgcgaagaaaacagccgccaagaaggcacccgccaaa
aaggttgccaagaaaaccgcaaccaaggcgaagaaggcgaccaagaaggccgcaaccaag
aaagcagccgctaagaaggcacccgccaaaaaggtcgccaagaaggcagttgaagaggat
gcaatcgacgaagtcgtcatcccgaagccgcgcaagcgacgcttgagcgcaaaggctcag
gaaaagttgaatgaaaaaattcgcggtctgatccgcatgtccaaggaacagggcttcctc
acctacaaggacatcaacaaagggctcccggaaagcgtcaataatccggaggaaatcgag
aacgtaatctcgatcctgcagaatctggaaatcgaagtcctcgatgacagccaggtggaa
gcgtacaaggcccgccaagaagagactgaggagaaagaagttcgcacctcacagaacgac
atcctcgacgacccggttcgtatgtacctcaagcagatgggtcaggtgccgctgctaacc
cgcgaggaggaagtcgccatctccaaacggattgaaaaggcagaactccgcgctcaggac
gccctcttctcaaccgctctgaccctcgaattccaaaacgatgtcgtgcaaaagctgctc
aaccgtgaagagcgcttcgaccgagtagttttagacaaaaagatcgaaagccgcgaggcc
tacttcaatagtctgccaaagttactcgaagatgcccacaagttgggtgaccgcatttat
tccgcatgggatagcatggaagaagccgcagcagcgggcaacgagaccaaccgtaagcgt
gcacgtactcgaatgaagaagtacgaggccgagctgagcggtgttctcaaaaagtactgc
ctcaagctgaaaatcttcgaagacttcctcaaggatctaacgcctacctatatggagctc
aaagagctctatgatgacctcgaaactgctgacaaagtcaccgctcgacgccgcaagcaa
gttgacgtcaaagcgatcgaacgccgtctggaggaaatcaagctggagttcaagatcgag
tccaaagaactcctcgacatcattcgtgaagtgcgcatcggcacccgcgaagcgcataag
gccaaaactgagatggttgaagccaatctgcgtctggtcatctcgattgccaagaagtac
accaaccgtggcctctccttcctcgatctgattcaggaaggtaacatgggcctgatgaag
gcagtcgaaaagttcgagtaccgccgaggctacaagttctcaacctatgcaacgtggtgg
attcgccaggcgatcacacgctctattgcagaccaggcacgtaccatccgcataccggtg
cacatgattgagacactgaacaaggtcatgcaggtccaaaagcagctcctgcaggaactt
ggtcacgagccgaccgcagaagaagttgccgacgagatgaacctgccgattgagcgtgtt
caatcgatcatgaagatggcacagcagccgatctctttgcaaagccccgtgggcgactcg
gatgacaccaatttcggcgacttcattgaggataagggcgcggagaatccatacgacatg
actgcctacagtctgctgcgtgagaagatcaccgacgttctggattccctgaccgaacgt
gaacgccgcgtgctctccctacgcttcggtctggctgatggctactcgcgcacactcgaa
gaagttgggcgccagtttaaggtgacccgtgaacggattcgtcagattgaagcaaaggct
ctacgcaaaatgcgccacccaacccgaattcgccagctgcatggcttctttgaaggcgac
atcaatctcgataagcctggcatggacagcctcaagcgcgaaatggcgaaggagaaataa
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