Coraliomargarita akajimensis: Caka_1532
Help
Entry
Caka_1532 CDS
T01204
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caka_1532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caa03021
]
Caka_1532
03019 Messenger RNA biogenesis [BR:
caa03019
]
Caka_1532
Transcription machinery [BR:
caa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Caka_1532
Messenger RNA biogenesis [BR:
caa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Caka_1532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
AAA_25
NACHT
ATPase_2
AAA
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADE54551
UniProt:
D5EJF2
LinkDB
All DBs
Position
1903937..1905097
Genome browser
AA seq
386 aa
AA seq
DB search
MAAACSRLSMSNEEKSKDSEVEVSGILEILQNKTGQLIDPTRNGKTRPSDPFVPRELIKR
FKLKQGNLIAAKAQHNPRHPNPKVRFIDTVDGQTMDERRGRYSFQQLTSIPPEEQLVLEA
KDGRLTTRVMDLFCPVGKGTRGLIVAPPRTGKTTLLHDIAHGISQNHKECHLLVLLVDER
PEEVTDFKRSVDAEIYASSNDEEITSHIRVAELAIERAKRLVESGKDVVFLLDSITRLSR
AYNSATGKGGRTMTGGLDIRALEKPRQLFSAARNCEEGGSLTIIATALIETGSKMDELIF
QEFKGTGNMEMVLDRKAAELRLWPAVNLNASGTRREELLLSGKRLAASQFLRRALAGQKI
EDAAEAMIDRIGQTKSNAEFLDLIKL
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcatgcagtcgcttatcaatgagtaacgaagaaaagtccaaagacagcgaa
gtcgaagtatccggcattctggagatcctccagaacaagaccggccaattgatcgaccct
acccgaaatggtaagaccaggcccagtgaccccttcgtcccacgcgagctgatcaagcgc
ttcaaactcaagcaaggcaacctaatcgccgccaaggcccaacacaatccacgccacccc
aacccaaaggttcggttcatcgacaccgtcgatggccagacaatggatgaacgcaggggc
cgatacagcttccaacagctgacgtcgatcccccctgaagagcaactcgtcctcgaagcg
aaggatggccgcctgacaacgcgcgtcatggatctcttctgtcctgtcggcaaaggcact
cgcggcctgattgttgccccaccgcgaacgggtaagaccaccctcttacatgacattgca
cacggcatttcgcagaaccacaaggaatgtcatcttctcgttctactggtcgacgaacgc
cccgaagaagtcaccgactttaagcgcagcgtggatgccgaaatctatgcatcgtcaaac
gacgaggaaatcaccagccacattcgtgtcgctgaattggcaatcgagcgcgcaaaacgc
ttggtcgaatccggcaaggatgtcgtctttctgctcgattcaatcacccgactctcccgc
gcgtacaattcggcaaccggaaagggtggccgcaccatgactggtggcctggacattcgt
gcgctggaaaagccgcgccagctcttctccgccgcacgtaactgcgaagaaggcggcagc
ctcaccatcatcgcaactgctctgattgaaaccggcagtaaaatggacgaactcatcttt
caagagttcaaaggaaccggtaacatggaaatggttctggaccgcaaagctgccgagcta
cgcctctggcctgcggttaacctgaacgcctccggaacccgccgcgaagaactgctcctc
tccggcaaacgtctggctgcttcccaattccttcgccgtgcgctggcggggcaaaagatc
gaagacgctgccgaggcgatgatcgatcgcattggccaaaccaagagcaacgccgagttc
ctcgacctcattaagctctaa
DBGET
integrated database retrieval system
