Coraliomargarita akajimensis: Caka_1665
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Entry
Caka_1665 CDS
T01204
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Caka_1665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caa03021
]
Caka_1665
03400 DNA repair and recombination proteins [BR:
caa03400
]
Caka_1665
Enzymes [BR:
caa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Caka_1665
Transcription machinery [BR:
caa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Caka_1665
DNA repair and recombination proteins [BR:
caa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Caka_1665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF29
Motif
Other DBs
NCBI-ProteinID:
ADE54684
UniProt:
D5EJT5
LinkDB
All DBs
Position
complement(2051441..2052442)
Genome browser
AA seq
333 aa
AA seq
DB search
MPKRLGKFELPNRLVKVEETATDTFAVFQAEPFEAGYGHTIGNSLRRVLLSSIEGAAISS
IKIDGVQHEFQSIEGVVEDVTDIVLNLKKVLLVSESRESVNLIIDVTREGAITAADIQED
ANIQVVNPDQVICTLEKEQRFFAELEVRVGRGYCTGDDNKKAEQPIGVIAIDSLFSPVKL
VKYSVENTRVGQEMDYDKLVLEITTDGRISPDDALKQSAAILKHHLDVFDEVSQDDIEFE
SESKEISEEQNRLRKLLNMSVNEIELSVRAANCLNNANITTVGELAMKSEQEMLKYRNFG
KKSLNEIKDKLEQLGLSLGMKIDERLLEKGSEF
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcgcttaggaaaattcgaactgcccaatcgtctggttaaggtagaagaaacc
gctactgacacatttgccgttttccaagccgagcctttcgaggctggttacggacacacg
atcggtaactcccttcgccgtgtcctccttagctccatcgaaggggctgctatctcttcg
attaagatcgatggtgttcagcacgaattccaaagcatcgaaggtgttgttgaagatgtc
actgacatcgtcctcaacctgaagaaggtgctgctcgtttccgaatcccgtgagtccgtc
aatctcatcattgatgtcacacgtgaaggtgcgatcaccgcagcggacattcaggaagac
gccaacattcaggttgttaacccggaccaagtaatctgcaccctcgagaaggagcaacgc
ttcttcgccgaacttgaagttcgcgttggacgcggttactgcaccggtgatgataacaag
aaggcggagcaaccaatcggcgttattgcaatcgattccctgttcagcccggtcaagctg
gttaagtactccgttgaaaacacccgtgtggggcaggagatggactacgataagcttgta
cttgagatcaccactgacggtcgtatctctccggacgacgcactgaagcaaagtgccgcg
attctgaagcaccacctcgatgtattcgacgaagtgtctcaggacgacatcgagttcgaa
agcgaaagcaaggaaatcagcgaagagcaaaaccgtctccgtaagctgctcaacatgagc
gttaacgagattgaactctccgttcgtgcggcaaactgcttgaacaacgcgaacatcacc
acagttggtgagttggcaatgaagtccgagcaggagatgcttaagtatcgcaactttggt
aagaagtctctcaacgagattaaggataagctcgagcaactcggtctttcgcttggtatg
aagatcgatgagcgccttcttgagaagggtagcgaattctaa
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