Coraliomargarita akajimensis: Caka_3012
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Entry
Caka_3012 CDS
T01204
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caa
Coraliomargarita akajimensis
Pathway
caa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caka_3012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caa03019
]
Caka_3012
03009 Ribosome biogenesis [BR:
caa03009
]
Caka_3012
Enzymes [BR:
caa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Caka_3012
Messenger RNA biogenesis [BR:
caa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Caka_3012
Ribosome biogenesis [BR:
caa03009
]
Prokaryotic type
rRNA helicases
Caka_3012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
CMS1
PSCyt2
Motif
Other DBs
NCBI-ProteinID:
ADE56025
UniProt:
D5EHY5
LinkDB
All DBs
Position
complement(3627375..3628949)
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AA seq
524 aa
AA seq
DB search
MINTTFADLGLRPELLESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFAL
PALHGLDLSNKATQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRAL
KKGVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQ
TLFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVRNRSKVEVMCRLLDM
EPTQRGIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILVAT
DVAARGLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEAIER
YIRQSIRRTRIPSQEEVEGYRADKIFNQLRDKLEAAEFKNYDHQVDRLLDAGHTPTDIAS
ALIDMLHTEDERSSETIAEDNEPYQESARGPRAKHRKGKYPKRGYDFVPKGKFRPKERPR
REDKPRSKAPHKAKSDLAGSSNTHKNKQSPGKFASSKRRFKRPD
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacaccactttcgcagacttgggccttcgcccggaactccttgagagcattcaa
cgccttggctttgaacagccctcgccgattcaggcacgaacgattcccgtcgctctcgat
ggcagtgatattgtaggtctgtcgcaaaccggctcggggaaaacagcggccttcgcgctg
cctgctctccacggtctggacctctcgaataaggcgactcaggtactcgtactctgcccc
acacgggaacttgcggtacaggtctgtgaggagattcatcgcctttcgactgcgatgccc
aagctacaagcgcttccagtctatggcggcacgccgatcgatcgccagatccgtgccctg
aagaagggcgtccatgtggttgtcggcaccccgggccgcgtcatggaccacatgaagcgc
aagacactcaaaacggactccatccgactgtgcattcttgacgaagccgatcgcatgctc
gacatgggctttcgtgaagatatggaaatcattctcgacgcgatccctcaagagcgtcag
acgctgttcttctctgcgacgatgaatcgcggtgtacaaggcttgatcaaagcctttagc
cacgacgctaagcaaattgagatcgaacagaagacactgactgtcgagtccattgagcag
gtatactacgaagttcgcaatcgctccaaagtcgaagtgatgtgccgcctactggacatg
gaaccgacccaacgcggcatcgttttttgcaataccaagcaaatggttgaggatgtctgc
gaagccttgaacgcacgtggctacaccgctgaccgcattcacggtgatatctcacagggc
attcgcgaaaaggtgatccgccgcttccgcgataatgcgatcgaaattctggtcgcaacc
gacgtcgcggcacgcggcttggacattgacgacatcgaactcgtcttcaactacgacctc
ccctacgatccggaagactatgtccaccgaatcggacgcacgggccgcgctggccgttcc
ggaaaatcaatcaccttcgtctacggtcgtgacattcgccgactcgaggcgatcgaacgc
tacatccgccagtcgattcgccgcactcgaattccaagtcaggaagaagtcgaaggctac
cgtgccgataaaatcttcaatcaacttcgcgataaactcgaagctgcagagttcaagaac
tacgaccatcaagtcgaccgtctactcgatgcgggtcacacgccaaccgacatcgccagt
gcgctgatcgacatgctccacaccgaggatgagcgcagtagtgaaaccattgctgaagac
aacgagccctatcaggagagcgcccgtggtccgcgagcgaaacatcgaaaggggaagtat
ccaaagcgtggttacgactttgtgccgaagggaaaattccgtccaaaagaacgcccgcgc
cgcgaggacaagccgcgtagcaaagctccccacaaagccaagagcgatctcgcaggcagc
tcgaacacacataagaacaagcaatctcccggtaagtttgcgagtagcaaacgccgcttc
aagcgcccggactag
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