Chlamydia abortus S26/3: CAB200
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Entry
CAB200 CDS
T00242
Symbol
pmp1B
Name
(GenBank) polymorphic outer membrane protein
Organism
cab
Chlamydia abortus S26/3
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chlam_PMP
ChlamPMP_M
Autotransporter
Ig_7
Motif
Other DBs
NCBI-ProteinID:
CAH63658
UniProt:
Q5L6R3
LinkDB
All DBs
Position
complement(217265..222631)
Genome browser
AA seq
1788 aa
AA seq
DB search
MKWLSATAVFAAVLPSITVFGEPLSKELNSSYRGSGLSASDSASKNFTQQTQDDSGTTYT
ITGDVSFRNFTNIPDPKPRTVEPDPAPAPAPDTQSNTVSSKPKSESKPSLSTGYENTVTQ
PQETLYHGPDDLHVTSFASHVVEGNQAISDIGKFADEKSHPLSFSLSSSSHAVSTSTTDA
STSTPAPKGGGAFYNDKAGPITFITHAGNPGSLSCTLIRMTGQGGAIYSKGPISFDGLEN
LTFRDDLSQQAGGALFTDSTLTIRNILDSIEFTNNSARVPIPLVPVLPAKSAPGAGVGGL
VPPKLKETHLLPRYFSQEIKVQDAESQTSIFPTYTTETAGNGGAIFAKGAIVISTYKDMT
FRSNSAEFPLIIDVIKEQIDAQKKAASLPSASEKIHASADVAKQQVREAPPVIKGSGGAI
FGLDTITIRDGSEDTLFILNTATGAGGAIYGDKDISLNNIANLRFQSNSADTRGGAIYAK
GNLTIQDSTVLTQFNANSGKTGGGAIYCLGNVTLSNLSQVRFGVNKAGNYDLKITIPGKE
ASTAHVLSSVVEEQKAPVPIEPPLGKGGGIYVEKAFTVSHVTSILEFINNQATDHGGGAY
VKGALNYSNSHRIQFTTNTSKKSGGGLYCESDVTFSNLTGKTLFQGNKAEENGGGICLAD
TKSLTLSNLENFCLVNNTTSKSGGGAYIPKALSFTFSNPDTVSSTTPATVPVFGSAVITG
NKAEENGGGVYTTKAALTNLESIDIGQNSAKNGAGLCTTSAPAAGVAAIGEEELDFKVDY
VVTANVTKNNATESGGGVYGKKGKISRLDHLNITGNSAGKSGGGLYFTEKLTLEGIEISK
ISDNTAKESGGAIYAKALTCTNFPDGLTVSNNKAQVTSTTTSSPQKASIPTAITGGAFSA
ETLILEKLQGNCTFSGNAAIDNNTASLSSDPTDPNIQGGALYAKTSLTLQNSSGSLTFSG
NSATTKRSSTTGQVAGGAIYSPTVTIQNCSQPISFVGNSALCTPAEQPPAEDPAPKATFG
GAIAGTTSITFTGNQALFFKENSADNGSAIGCKNGSNGTVTFSDAVFCSFEGNIAKNRGT
IYADTLSIPQGYMNFSNNSSANDGSAIYFTKKADITAAASILFLDNKVTLAQTSDKQRSQ
VNNLGAAIYGEGNSTDAELNLTALGGSITFKNNQCAPQGKKSNPSFCSITGKVKLTLNAA
ANQSINFYDAVRTQTVQSSGSNYTTLDINKTSSEGNPPKYTGTVLFSSEYHENKSVIPQK
VVLHDGTLILGKNTELNVVSFDQKAGSSLVMGPGAVLSTQQKTGGSSGATGGIAINNLTI
DFSDIVSEDGTATPPALKLGVAPAAAAAGARAHVARNNVLPRADVSNPDVTKEKVYLTGT
ITLIDPAGTFYQNPYLGEDRQIELLKLPESGKVEISDLTLEGDTKPLKGYIGSWTLGPGD
QNGTLKANWKFEEYRRWIYIPRDNYFYVNSILGSQNSLIAVKQGIVNNMLNNARFDDAAY
NNLWLCGIGSFLQKEQGEESRSFSYHSRGYSLAIDAKPRPEFILGASFSQVFGHSKSEKA
VDNYKHKGSDHSFQGTLYAGKSFYLPYRRTQSPQPILLQGVMTYGYMKHDTTTYYPSIHE
RNLGNWEDLGWLFDIRMILDLKEPSQNSTTRFSFYSEAEYTGVRQKQFTELDYDPRTFDS
FAYRNLSIPLGFVFEGALMQYNILMYNKLSLAYVPVIYRNKPKCNYRVNSTGQTGQVYGV
IPTRNTGRVEYSSQLYLGSYWTLYGTYTVEAGMSSLVQMANCGARMIF
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgaagtggctatcagctacagctgtttttgctgccgtactcccctcgattacagtattt
ggagaacctctttcgaaagaattaaactccagctacagaggatcgggattaagtgcttca
gattctgcatcaaagaatttcacgcagcaaacacaagatgacagcggaacaacatacaca
attactggggatgtctctttcagaaacttcacgaatattcctgatcctaaacctagaaca
gtagaacctgatcctgcccctgctccagctcccgatacgcaaagtaatactgtctcaagc
aaaccaaagagcgagagtaagccaagcctttccacagggtatgagaatactgttacacaa
cctcaagaaacgttgtatcatggccctgatgatctgcatgttacatcatttgcttcgcat
gtggtagagggaaatcaagcaatttctgacataggaaagttcgcagatgaaaaatctcac
cctctaagtttctcattatcttcatcttctcatgccgtctctacctccacaacagatgcg
tctacttctactcctgctcctaaaggaggaggtgctttttacaatgacaaagctggtcct
ataacgttcattacacatgcaggcaacccaggatccttatcctgcaccctaattagaatg
acaggacaaggtggggctatatactccaaaggtccgatatcttttgatggattagaaaac
cttacattccgggatgatctatcccaacaagcgggtggtgctttatttaccgactctaca
ctgacaattaggaatatcctcgactctattgagtttacaaataactctgctcgtgttcct
atccctctggttcccgttctaccagcaaaatcagctcctggagctggagttggtggttta
gttcctcctaaactcaaggaaacgcatctcttgcctcgatacttctctcaagaaataaaa
gtgcaagatgcagagagtcaaacatctatattccccacctacacgacagaaactgcaggg
aatggaggcgccatttttgctaaaggcgctattgtcatctctacttacaaagatatgact
ttccgaagcaactctgcagaatttcccctcattattgatgtaattaaagaacaaattgat
gcgcagaaaaaagcagcatcattaccctcagcttctgaaaagattcatgcctctgcagat
gtagctaaacagcaagtacgagaggctcctcctgtgattaaaggctctggaggcgccatt
tttggcttggataccattaccattcgtgatggctctgaagacaccctctttatattaaat
actgctaccggagctggaggtgccatttatggagataaggacatctccctaaataacatt
gcgaacttaaggttccaaagcaactccgcagatacgcgaggcggagcaatttatgcaaaa
gggaatcttacaatacaagattccaccgtactcacacaatttaatgcaaacagtgggaaa
acaggtggtggagctatctattgcctagggaacgtcacgctaagcaacctctctcaagtc
cgttttggtgttaacaaagctggaaactacgatctcaaaattactattccaggcaaagaa
gcatctactgctcacgtactgtcttccgtagtcgaagaacaaaaagctcccgtacctatc
gaacctcctttagggaaaggcggtggtatctacgtcgagaaagctttcaccgtctctcat
gtgacttctattttagaatttatcaataaccaagccacagatcatggtggtggtgcgtac
gtcaaaggagcattaaattatagcaattctcacagaatacaatttactacaaacacctca
aaaaaatctgggggcggtctgtattgcgaaagcgatgtgaccttctccaacctcactggg
aaaacactctttcaaggcaacaaagccgaagaaaatggtgggggtatctgtctagctgac
actaaatcccttaccttatccaacttagagaacttttgtttagtcaacaataccacaagc
aaaagtggtggtggagcatatattcctaaagcgctttcctttaccttctccaatccggat
actgtctcttctacaacaccagctacagtacctgtctttggaagtgctgtgatcactggc
aacaaagccgaagaaaatggtggcggtgtgtacacaactaaagctgccttgactaaccta
gaatccatcgatattggtcaaaactctgcgaaaaatggtgccgggctgtgtactacaagc
gcgccagcagcaggtgttgcagcaataggagaagaagagttagactttaaagttgattat
gtcgttacagccaacgtaacaaaaaacaacgctacagaaagtggtgggggcgtttatggg
aaaaaaggaaaaatctctcgtctagaccacctaaatattaccgggaactctgcaggaaaa
tccggtggagggctgtatttcacggaaaaactgactcttgaaggtatagaaatttccaag
atttccgataatactgcaaaagaatccggtggagctatctatgccaaagcacttacctgc
actaactttcctgatggacttactgtaagcaataacaaagcgcaagttacctcaactact
acatcatcaccgcaaaaagctagtattcctaccgctatcacaggtggtgctttctctgct
gaaacgttgatcttagaaaagttgcaaggaaattgtacgttctctgggaacgcagccatt
gacaacaacacagctagtctatcttctgatcctactgatcctaatattcaaggtggggcc
ctctatgccaagacgagccttacacttcaaaatagctcaggcagtttaaccttctcagga
aactcggcaacaacaaaacgatcctctacaacaggacaagtagccggtggagcgatttat
tctcctactgtaacaattcaaaattgttcacaacccataagctttgtaggcaattctgct
ttatgcactccagcagaacagcctcctgccgaagatcctgcgccaaaggcaacctttggt
ggagccattgcaggaacaaccagcattacatttacagggaaccaagcactatttttcaaa
gagaactctgcagataacggctcagctattggttgtaaaaatggttccaatggcacagta
acgttctctgacgctgtgttctgctcgtttgaagggaatatagcgaaaaaccgtgggact
atctacgcagatacgttatctattcctcaaggatacatgaacttctcgaacaatagctct
gcgaacgacggtagtgcaatttacttcacaaaaaaggcagacatcacagcagcggcttct
attctgttcctagataacaaggtcactctagctcaaacttccgataaacaacgctctcag
gttaacaacctaggtgcagcgatctatggggaaggaaatagcactgatgcggaattaaat
cttacggccctaggcggtagcattacatttaaaaataaccaatgcgcacctcaggggaaa
aaatccaatccatctttttgcagtattacaggaaaagttaaactcactcttaacgctgct
gcaaatcaatccattaatttctatgatgctgtaagaacccaaacagtgcagtcttctggt
agcaactacacaactttggatattaataaaacatcaagtgaaggtaatcctcccaagtac
acaggaacggtattattctcttcagaataccatgagaataaatcggtcatcccccaaaag
gttgtcttacatgacgggaccttaatcttagggaaaaatacagagttaaatgtggtgtct
ttcgatcaaaaagctggatcttcacttgtgatgggaccaggagcggtactttccactcag
caaaagactggaggatcatcaggggcaactggaggcattgcgatcaacaacctcactatt
gattttagtgatattgtctcagaagatggaacagccacccctcctgcgttaaaattaggt
gtagctcctgcagcggcagcagcaggagctagagctcatgttgccagaaacaacgttctt
ccaagggcagatgtatccaatccagatgtaactaaagaaaaagtctatttaacaggcaca
attactcttatcgaccctgcgggaactttttaccaaaatccttacttaggcgaagatcgt
cagattgagttacttaagctcccagaaagtggcaaagtagagatctctgacttaactcta
gaaggagataccaaacctctaaaagggtatattggctcctggacactaggaccaggtgat
caaaacggaacgctcaaagccaattggaagtttgaagagtaccgccgctggatttatatc
cctagagataactacttctacgtgaactctatcctcggttctcaaaactccctcattgct
gtaaagcagggtattgtgaacaacatgctaaacaatgcacgttttgatgatgcggcttat
aataacctttggttatgtggtataggctcgttcttacaaaaagaacaaggagaagaatcc
aggtccttctcctatcatagccgagggtattcattggctatcgatgctaaaccacgccct
gagtttatccttggagcctcgtttagccaggtgttcggtcactcgaaatcagaaaaagct
gtagataattacaagcataaaggttctgaccactccttccaagggacattatacgccgga
aaatctttctatttgccttatagacgtacgcaatcccctcaacctatattgctgcaaggg
gtcatgacctatggctatatgaagcatgatacaactacctattacccatccattcatgag
cgcaatcttggaaattgggaagatcttggttggttgtttgatatccgtatgattctcgac
ttaaaagagccttcacaaaactctacaacgagattttctttctactctgaagctgagtac
acaggagtacgtcaaaagcaatttacagagctggactatgatcctagaacattcgactcc
ttcgcttatagaaatctttctatacctttaggtttcgtgtttgaaggtgcattaatgcaa
tataatattcttatgtataacaaattatcccttgcttatgtacctgtgatttacagaaac
aagcctaaatgtaattacagagtgaactctacaggacaaactggacaagtgtatggtgtc
attcccaccagaaacactggaagagtggaatatagctcacaactctatcttggctcttac
tggacgttatatggtacatacactgtagaagcaggcatgtcttcattagtccagatggct
aactgcggtgcacgtatgatattctaa
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