Chlamydia abortus S26/3: CAB660
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Entry
CAB660 CDS
T00242
Symbol
rpoC
Name
(GenBank) putative DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cab
Chlamydia abortus S26/3
Pathway
cab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAB660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cab03021
]
CAB660 (rpoC)
03400 DNA repair and recombination proteins [BR:
cab03400
]
CAB660 (rpoC)
Enzymes [BR:
cab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAB660 (rpoC)
Transcription machinery [BR:
cab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAB660 (rpoC)
DNA repair and recombination proteins [BR:
cab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAB660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Mei5
Motif
Other DBs
NCBI-ProteinID:
CAH64107
UniProt:
Q5L5I4
LinkDB
All DBs
Position
complement(766187..770368)
Genome browser
AA seq
1393 aa
AA seq
DB search
MFGEGSRDNVALSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVLIVHIWFFK
TTPSRIGNVLGMTASDLERIIYYEEYVVIDPGKTDLNKKQLLNDAQYREVIEKWGKDSFV
AKMGGEAIYDLLKSEDLQSLLKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHAEWM
VLKSVPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEDHGGKIKIFKDVTEV
LRALYSGGFLDEHTDGRRDETGRGIHIHEKIKVRIDGQVIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLKDVKIPEIKSE
ILKEAYDKVAIVKKQYDDGIITDGERHSKTISIWTEVSELLSDALYVEISKQTKSKHNPL
FLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEITAIRQGSEELLPLKDRIYGR
TVSEDIYQPGDKSKLLAENGDVITSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVTNCDGILVYID
LRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTKSIESLETYPVELGVKILVGD
GEKVTAGQRIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVANKNTGLVELIVKQHRGE
LHPQIAIYSDPGLTELVGTYAIPSGAIVSVEENQKVDPGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQ
MLQKVRITDPGDTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQEE
LVFDFVSESECAC
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgttcggagaaggttctcgagacaatgtcgctctatctaaagaggggctatttgataaa
ttagaaattggaattgcctcagatattactattcgtgataagtggtcttgtggggaaatc
aagaaacctgaaacaatcaattaccgtacgtttaaacctgaaaaaggtggactattttgc
gaaaagatttttggtcctacaaaggactgggaatgctgttgtggtaaatacaagaagatc
aaacataaaggtattgtttgtgatcgctgcggagtagaggtgactctttctaaggttcgt
cgtgaacgtatggctcatattgagttggcagtacttatcgtacatatatggttttttaag
actacaccttcaagaataggtaacgtcttaggaatgaccgcttctgatcttgaaaggatt
atttattacgaagaatatgtagttatcgatccaggtaaaacagatttaaataaaaagcag
cttttaaatgatgctcaatatcgagaagtcatcgagaagtgggggaaagattcctttgta
gctaaaatgggcggagaggctatctatgatttgttgaaatcagaagatctccaaagttta
ttaaaggagcttaaggatcgtctgcgaaaaaccaaatctcagcaagccagaatgaaactt
gctaagcgattgaaaattatcgaaggttttgtctcttcttcgaaccacgctgagtggatg
gttttaaaaagcgttcctgttgttccacccgatctgcgtcctttggttccattagatggt
ggaaggtttgctacttctgatttaaatgatttataccgtcgtgtaattaaccgaaataat
cgtctaaaagctattttaaggctaaaaactcctgaagtgatcgttcgtaatgaaaaacgt
atgctacaggaagctgtggacgctctatttgataacggtcgtcatggacaccctgtgatg
ggagctgggaaccgtccattaaaatccctttctgaaatgttgaaagggaaaaatggacgt
ttccgacaaaatcttttaggtaagcgtgtggactattctggacgttctgtcattatcgtg
ggtccagaattgaagtttaatcaatgcggtttgcctaaagaaatggctcttgaattgttt
gaacccttcattattaaaagattaaaagatcagggtagtgtctatactattcgttctgct
aagaaaatgattcaacgcggagctcccgaagtttgggatgttctagaagaaattattaaa
ggccatcccgtattgcttaaccgagctcctacactccaccgcttaggaatacaggcgttt
gaacctgtattaattgaaggtaaagcgattcgtgtgcatcccctagtctgcgcagcattt
aacgcggacttcgatggagatcaaatggctgttcacgtgccactgtctatagaagcgcaa
ttagaagccaaagttttgatgatggctcctgataacatcttcttgccatcttctggaaag
cctgtcgctacaccttctaaggatatgaccttaggtatttactatcttatggcagacccg
acatattttcccgaagatcacggaggaaaaatcaagatctttaaggacgttacggaagtc
ttgcgagccttgtattctggcggattcctagatgaacatacggatggtcgtcgcgatgaa
acaggtcgtggtattcatattcacgagaaaattaaagtacgcatcgatggtcaagtgatt
gaaacgactccaggaagagttctgtttaatagaattgttcctaaagagttagggttccaa
aactacagcatgccaagtaagcgtatcagtgaattgattttacaatgctataagaaagtg
gggctggaagctactgtacgcttcttagatgatctcaaggacttaggatttatccaagcc
acaaaagcggcgatctctatgggattgaaagatgtaaaaattcctgagattaaaagtgaa
attcttaaagaagcttatgacaaggttgccattgttaagaaacaatacgatgatggtatt
atcaccgatggcgaacgtcattctaaaacgattagtatttggactgaagtttcagaactc
ttatccgatgctctgtatgttgaaattagtaagcaaactaaaagcaaacataaccctctg
ttcttgatgatagattcaggagctcgaggtaacaagtctcagttgaagcagttgggagct
ttacgaggtttaatggcgaagccaaacggtgcgattatcgaatccccgattacctctaat
ttccgcgaaggattaaccgttcttgagtattccatttcttctcacggtgctagaaaaggt
ttagctgatactgcattgaaaacagcggattctgggtatttaactcgaagacttgttgac
gtagctcaagatgtcatcattaccgaaaaagattgcggaacattgaatcatatcgaaatt
actgcaattcgccagggttcagaagagctgttacctttaaaagatcgtatttatggtcgt
acggtatcagaagatatctatcaacctggtgataaaagtaagcttctggctgagaatggc
gatgtgattacatctgctcaggctgaactgattgatgacgcaggaattgaaagtattaaa
attcgctccacacttacttgtgaaagtcgccgtggtgtctgcgctaagtgttacgggtta
aaccttgctaatggtcgcctgattggtttgggagaagctgtcggtattatagccgctcaa
tccattggtgaacctggaacacagctaacaatgagaacgttccaccttggaggtatcgca
gcgacatcttcaactccagaaattgttacaaactgtgatggtatcctagtatacatagat
ctacgtgttgttgtgggtcaagatggaaatcacttggtcttgaataagaaaggcgctatc
catgttgtccgtgatgaaggacgtagtttagaagaatacaagaaacttctaagcaccaag
tctatagaaagtttagagacttatccagtagagctcggtgtgaagattttagtaggtgat
ggggagaaggtaactgcaggccaaagaattgctgaggtcgaattacataatattccaatt
atttgtgataagcctggttttgtaaaatacgaagacttagtagagggtatttctacagaa
aaagtagctaacaaaaacacaggtttagtcgagcttattgttaaacagcatcgtggagaa
ctacatcctcaaattgctatttattctgatcctggtttgacagaattggttggaacatac
gcgattccttctggagcgattgtttctgtcgaagaaaatcaaaaagttgatccggggatg
ttattagcaagattacctcgaggagccattaagactaaggatattaccggggggctacct
agggttgctgaattagttgaagctcgtaagcctgaagacgctgcagatattgcaaagatt
gatggtgttgtagactttaaaggaattcagaaaaataaacgtattcttgttgtccgtgac
gaaatcacaggaatggaagaagaacacctgattccgttgaccaaacacttaattgttcaa
cgtggagatcatgtaatgaaaggacagcagctaacagatggcttggttgttccacatgag
atcctagaaatttgcggtgtgcgcgaattgcagaaatatttagtgaatgaggttcaagaa
gtttatcgtctacaaggtgtggacattaatgataagcatgtggaaatcattgttcgtcaa
atgttgcagaaggttcgcattactgacccaggtgatactactttactcttcggggaagaa
gtgaataaaaaagaattctacgaagaaaataaacgtactgaagaggaaggtggaaaacca
gcacaagctgttcctgtattattgggaattaccaaagcttccttgggtacagaatcgttt
atttctgccgcatccttccaagatacgacgcgggtattaactgatgcagcgtgtagtagt
aaaactgactacctattaggattcaaagagaatgtcattatgggacacatgattcctgga
ggtacagggtttgatacacataagcgcattaagcagtacttagaaaaagaacaagaggaa
cttgtctttgactttgtaagtgagtctgaatgcgcttgttag
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