Chlamydia abortus S26/3: CAB843
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Entry
CAB843 CDS
T00242
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cab
Chlamydia abortus S26/3
Pathway
cab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAB843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cab03400
]
CAB843
Enzymes [BR:
cab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAB843
DNA repair and recombination proteins [BR:
cab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAB843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
DUF3638
ERCC3_RAD25_C
RecG_dom3_C
ADDB_N
AAA_19
UB2H
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAH64284
UniProt:
Q5L511
LinkDB
All DBs
Position
976115..979372
Genome browser
AA seq
1085 aa
AA seq
DB search
MPMDFDPVNLNLSILSEITNTSVPLLIENILPGARSFLAAKLFHERKESVVMITTRSRID
DLFEDLASFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKILYDLYQKKAPIFCVTTLKAL
LEKTRSPKDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFP
LSSQEPFRIEFWGEKIISIRPFNPSDQLSTGKVSQLSISPATKDSGTEVLSHCLLDYFAT
PPTFLFDNLTMLEDDFSDISGTLSSLPNRFLPIQDLCQRAFQSQTIFFEEKNFPNVRTIK
HNTVNIEVFHCDVQASRLVAPFIYPNEILDEQTNPLLGFLQKLQEYLPSQGQPFNVALYN
TKAKALKEARALIETLGQNSIHIYEKSGNLSSSFALVNERFAAISLAEFASTKVLRRQKQ
RNYFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVP
SDQAYLISRYVGISDKTPDLHNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTTPAFI
YPPHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQ
GNVDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPR
TLYMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETVSAALRHELLRGGQAYVIHNLIES
IFRLGNTIRTLVPEARIAVAHGQMSSDELASIFQKFKDKETNILVATALIENGIDIPNAN
TILVDHADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSPLLFNDDVKIE
FPYKSRIPDTYIDLASLRIEFYQKIGGAEDAEQLDFIKEEMRDRFGPLPEEVLWLFALAH
LRLFALQHNISSIKGTGNALYIQQRHGKTEQIKKTLPYSLSPTPELLVSEVLESIEKAFP
LKTPR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgccaatggatttcgacccagttaatttaaacctatcgattctatctgaaataactaac
acctctgttccattactcatagaaaatatccttcctggagctcgtagtttcttagctgct
aagctgtttcacgagaggaaagagtctgtggtaatgatcaccacgcgctctcgtattgac
gatctctttgaagatcttgcttcgtttttgggcttccctcctgtggagttcccttcatca
gaaattgatttatctccaaagcttgtgaatatcgatgcggtagggaaacgtgataagatt
ctttatgatttatatcagaagaaagcgcctatattttgtgtgacaacactcaaagcttta
ctagagaaaactcgatcacccaaagatacagcgcaccaacatttagatatccaagttggg
gatgttcttgatcctgatatcatgatcgatctatgtaaaaatttaggttatcgccatgaa
actctcgccagcgataagggagagtttgcttatagaggagggattattgacatctttcct
ctatcttctcaggaacctttccggatagagttttggggagaaaagatcatctccatacgt
ccttttaatccttctgatcaactctccacagggaaagtctcccagttgtctatatcccct
gcaaccaaagattcgggaacagaagttttatcacactgcttattggattattttgctaca
cccccgacatttctctttgataatttaaccatgttagaagatgatttctctgatatttcg
gggactttatcttcgttacctaaccgtttcctacctatccaagatttatgtcaacgcgcc
tttcagtcacagacgattttctttgaagagaaaaactttcctaatgttcgtacaattaaa
cataatacagtaaacattgaagtttttcactgcgatgttcaagcttcccgacttgttgct
ccttttatctatcctaacgaaattctcgatgaacaaaccaatcctcttcttggttttcta
caaaagcttcaagaatatcttcctagccaagggcaaccttttaacgtagctctctacaat
acaaaagcaaaagctttaaaagaagctcgggccctaatagaaactctaggccagaactct
atacatatttatgaaaaatctggaaatctctcttctagctttgctcttgtcaacgaaaga
tttgcggctatttccctagcggaatttgcctctacaaaagtattacgaagacaaaaacag
agaaattatttttccgtaactacggaagaagtcttcgttcctattccaggagagacagtt
gttcatttacacaatggtattggcaaatttatcggaatggaaaagaaaccaaaccattta
aatattgaaactgactatctagttcttgaatatgctgacaaagcccggctgtatgtgcct
tcagaccaagcctatctgatttcacgttacgtaggcatttctgacaaaactcctgacctg
cataatctcaatggctctaaatggaaacgctctcgagatctctctgaaaagtctctcgta
ttatatgctgagaaactccttcagctcgaagcccagcgctctacgactcctgcttttatt
tatcctcctcatggagaagaggtgataaaattcgaagagagctttccttatgaggaaact
ccagatcaattaaaagccattgaacaaatttattccgatatgatgtccgataagctaatg
gaccgtttaatttgcggtgatgcgggcttcggaaaaacggaagtcattatgcgggccgct
gtgaaggctgtttgtgatggtcagcgccaggtgattgttatggtccccacgaccattctg
gcgaatcaacattatgaaactttcacccagcgtatggcaggattgccaataaatattgct
gttctttcacgcttttctgaagggaaggcactaaaaaaaatctttgaggatacggctcaa
ggtaatgtagacattttaattggcacacacaagctaattaataaaaacttagaattcaaa
aatcccggtttattgattattgatgaggaacaacgttttggtgttaaagttaaagatttt
ctcaaagagcgttaccctacgatagactgtctcacagtatcagctacacctattccgaga
acattatacatgtcgttatcgggagctagagatctctctttgattaccatgcctccatta
gatcgactgcctgtctctacttttgttttagaacacaatgaagaaactgtatctgcagcc
ctacggcacgaattattgcgcggtggtcaagcgtatgtaattcataatcttattgagagt
atttttagattagggaataccatacggaccttagtgccagaagcacgtattgctgttgct
catggccaaatgtcttctgacgagttagcttctatttttcaaaaatttaaggataaagaa
actaatatccttgtagcaacagcacttatagaaaatggtatcgatattcctaatgctaat
actattttagtcgaccacgcagataaatttggcatggctgatctgtatcaaatgaaaggt
cgtgtaggaagatggaatagaaaagcctactgttattttttagtttctcacttagataga
ttatcaggccccgcggcaaaacgtttacaagctttgaataaacaagaatatggaggagga
atgaaaatcgctctccatgatttagaaattcgtggcgcgggaaatattttaggcaccgat
caatcagggcacatcagtgctattggattcaacctttactgtaagttattgaaaaaaacg
gtcgctgctttaaagaacaactcttctcctttattattcaacgacgatgtaaaaatagag
tttccttataaatcccgcatacctgatacctatatagatttggcgtctctgcgtatagaa
ttctatcagaaaataggtggtgctgaagatgcggaacagttagattttataaaagaagag
atgcgcgatcgcttcgggcctctacccgaagaggtcttatggttattcgcattagcgcac
ttacgtctatttgctttgcaacacaacatttctagcattaaaggcacggggaatgctttg
tatattcaacagcgtcatggaaaaaccgagcaaataaagaaaacattaccctattcttta
tcccccactccagaactcctggtatctgaagtgttggaatctatagagaaagcatttcct
ctaaaaacccctcgttaa
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