Caballeronia sp. SBC2: SBC2_05240
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Entry
SBC2_05240 CDS
T06459
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03030
DNA replication
caba03430
Mismatch repair
caba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBC2_05240 (holA)
03430 Mismatch repair
SBC2_05240 (holA)
03440 Homologous recombination
SBC2_05240 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caba03032
]
SBC2_05240 (holA)
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_05240 (holA)
Enzymes [BR:
caba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SBC2_05240 (holA)
DNA replication proteins [BR:
caba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SBC2_05240 (holA)
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SBC2_05240 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
QIE22514
LinkDB
All DBs
Position
576182..577306
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AA seq
374 aa
AA seq
DB search
MQLRLDALDAHLAKGLKGLYVVYGDEHLLAQEACDKIRASARAQGFTDRSVFVVDRYFDW
SSLLGASQSMSLFGDRQLVELRIPTGKPGKEGGEALKTLAGADNPDVLTLITLPRLDAAT
QKSAWFTALSGPGVMMKIDPVERAQLPMWIGQRLSAQNQRVAPGEDGRRALVFIAERVEG
NLLAAHQEILKLGLLHPAGVLTFEQIHDAVLNVARYDVFKLNEAMLTGDVGRLTRMLDGL
KGEGEAGTLVIWALVEEIRTLLRMKRGVAAGKPLATLLRENRVWGPRERLIGPALSRVTE
AALEKALSLAAKLDRQVKGLSGGGGPRGSTNPGDPPPNPWDGMFELAMTVASSGSPLQGK
VPGTPPTPAGKRPA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgcaacttcgactcgacgcgctcgacgcgcacctcgcgaaagggctgaaaggcttgtac
gtcgtttatggcgacgagcatctgctcgcgcaggaagcgtgcgacaagattcgcgcgagc
gcccgggcgcagggtttcacggaccgctcggtgtttgtagtcgatcgttacttcgactgg
agttcgctgctcggtgcgagccagtcgatgtcgctcttcggcgaccgccaactggtcgag
ttgcgcattcccacgggcaagcccggcaaggaaggcggcgaggcgctgaaaacgctggcc
ggcgccgataaccccgacgttctcacgctcatcaccttgccgcggctcgacgccgctacg
caaaagtccgcgtggttcaccgcgttgagcgggccgggcgtgatgatgaaaatcgacccg
gttgaacgcgcgcagttgcccatgtggatcgggcagcggctgagcgcgcaaaaccagcgt
gtcgcgccgggcgaagacgggcggcgcgcgctggtgttcatcgcggaacgggtggaaggc
aatttgctcgccgcgcatcaggaaatcctgaagcttgggcttttgcatccggcgggcgtg
ctcacgtttgaacagatccacgacgccgttctcaacgtcgcgcgctacgacgtgttcaag
ctcaacgaagccatgctgaccggcgacgtcgggcgtctgacgcgcatgctcgacggcctg
aaaggcgagggcgaagccgggacgctcgtgatctgggcgctcgtcgaagaaatacgtacg
ttgctgcgaatgaaacgcggtgtcgcagcgggcaagccgctcgccacgctgttgcgcgag
aaccgtgtctgggggccgcgcgaacgtctgatcgggcctgcactctcgcgcgtgaccgag
gcggcgcttgaaaaggcgttgtcgctggcggcgaagctggatcggcaagttaaaggcctg
tccggcggcggtggtccgcgaggcagcacgaaccccggagatccgccgcccaatccatgg
gacggcatgttcgagctcgcgatgaccgtcgcgtcgtcgggcagtccgctgcagggcaaa
gtgcccggcactccgccaacgcccgctggcaagcgcccggcctga
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