Caballeronia sp. SBC2: SBC2_12670
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Entry
SBC2_12670 CDS
T06459
Symbol
recD_1
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SBC2_12670 (recD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_12670 (recD_1)
Enzymes [BR:
caba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SBC2_12670 (recD_1)
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SBC2_12670 (recD_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
NAT10_TcmA_helicase
AAA_22
SLFN-g3_helicase
RecD_N
DEAD
AAA_25
WHD_DprA
MukB
GvpD_P-loop
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIE23248
LinkDB
All DBs
Position
1413800..1415854
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AA seq
684 aa
AA seq
DB search
MNAPDLTLVSDDNVALADGFARRIGALSKRLQGDADNVRWAQRAAFAVSRATTQGHVCIA
LDALAQRYGETAGVVHAALLASGVVCDGRKAAADLLPLVIDSSRRIYLARYFDYERRLAR
ALVERAQVSADAPDPAELKARVGRYFAASKNDDDNIDWQRVAALVALSGRLTIVSGGPGT
GKTTTVVGVLACLLDENPALRIALAAPTGKAAQRMQEALVERANVLPPELAARLPHTSFT
LQRLLGTQANGRFRHHRDNPLPFDVIVIDEASMIDVALAAHLLEAVAPGARLVMLGDKDQ
LAAVEAGAVFAELSAQPVFSDAGAARIAAALSMPADRFIAALPSGREGESDADGQTELLE
IEPMWIDEPGYLIPDDDKDAYDGYNVLASVSVPEVDWHPAAPAAFDQTAISPLTDCVVWL
QRNYRFGLDSDIGRLSVAIRRGSVDDALAALTLGSQDNPTKAALLIDDAGPHLSERTLAR
LNAGFEPYARMLAETLEAGTGAAPLFDALNRFRILAATRHGPRGVDEINARVSAWVRTAA
SVTLGAGAQWFAGRPVIVTRNDYALGVFNGDIGIALPAASGAMQVCFRMADGTLRMLSPA
ALPPHDTAFALTVHKSQGSEFDHAALVLPSAFGRMLSRELVYTAITRARSRIDVIGSTDV
FAQAVRTPTRRDSGLAARIAEAAL
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcccgacctcacgcttgtctccgacgataacgttgcgctcgccgatggtttc
gcgcgccggataggcgcgttatcgaaacgccttcagggcgacgccgacaacgtacgctgg
gcccagcgggcggcgtttgcagtaagccgcgcgacgacgcaagggcacgtgtgtatcgcg
ctcgatgcactcgcgcagcggtatggcgaaactgccggcgtggtacatgccgcattgctg
gcgagcggcgtggtgtgtgacggccggaaagctgctgcggacctgcttcctcttgttatt
gattccagtcggcgtatctatctcgcccggtatttcgactacgaacggcggctcgcgcgg
gcgctggtcgaacgtgcccaggtgtctgctgatgcacccgatccggctgaattgaaggcg
cgcgtggggcgctatttcgcggcgtcaaagaacgacgatgacaacatcgactggcagcgc
gtcgccgcgctcgtcgcgttgtcagggcgtctcaccatcgtgagcggtggcccgggaacg
ggcaagacaacaacggttgtcggcgtgctcgcttgcctgctagacgaaaacccggcttta
cgcatcgcgctcgcggcgcccacgggcaaggcggcgcagcgcatgcaggaagcgctggtc
gaacgcgccaatgtgttgccgcccgagctggcggcgcgtttgccgcacacgtcgttcacg
ctgcagcgtctgctaggcacgcaggcgaacgggcgcttccggcatcatcgcgacaatccg
ctgccgtttgatgtgatcgtgatcgacgaggcgtccatgatcgatgtcgcgctggccgcg
catctcctcgaagcggtcgcgcccggtgcgcggctcgtgatgcttggcgacaaggatcaa
cttgccgccgtagaagcaggcgctgtgttcgctgaactgagcgcgcagccggttttcagc
gatgcaggcgcggcgcggattgctgcagcgttgtcgatgccggcagatcggttcatcgcc
gcgttgccgagtggccgtgaaggtgaaagtgacgctgatggtcagaccgagctgcttgaa
atcgagcccatgtggatcgacgaacctggttatctgatcccggacgacgacaaagacgct
tatgacggctacaacgtattggcgagcgtgagcgtgcccgaagtcgactggcatcctgcg
gcgcctgccgcattcgatcaaaccgcgatcagtccgttgaccgattgtgtcgtgtggttg
cagcgcaattatcgtttcggcctggattcggatattggcaggttgtcggtcgccatccgt
cgtggttccgtcgacgacgcgcttgccgccctgacactcggcagccaggacaacccgaca
aaagcggcgctgcttatcgacgacgcgggacctcatctctccgagcgcacgctggcgcgc
ctgaacgccggtttcgaaccgtacgcgcgaatgctcgccgaaacgctcgaagcgggaacc
ggggcggcaccgcttttcgatgcgctcaaccgctttcgcatccttgccgccacgcgtcat
gggccgcgaggtgtcgatgaaatcaacgcgcgtgtatcggcgtgggtccggacggctgca
tcggtcaccctgggcgcgggcgctcaatggttcgcggggcggccagtgatcgttacgcgc
aatgactacgcgttgggcgtgttcaacggtgatatcggcattgcgctgccggcggccagc
ggcgccatgcaggtctgcttccgcatggcggacggaacgttgcggatgctctctcccgcc
gcattgccgcctcacgacacggcattcgcgctgaccgtccacaaatcacagggctcggaa
ttcgatcacgccgcgctggtattgccgagcgcgtttggccgcatgttgtctcgggaactg
gtttatacggcgatcacgcgggcgcgtagccgcatagacgtgattggctcgacggacgtc
ttcgcgcaggccgtccgtacacctacgcggcgtgactcgggcctggccgcgcggattgcg
gaggcggcattgtga
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