Caballeronia sp. SBC2: SBC2_12920
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Entry
SBC2_12920 CDS
T06459
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
caba
Caballeronia sp. SBC2
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caba03019
]
SBC2_12920
Enzymes [BR:
caba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SBC2_12920
Messenger RNA biogenesis [BR:
caba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SBC2_12920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
T2SSE
AAA_22
nSTAND3
AAA_19
NACHT
AAA_23
Cas3-like_C_2
TsaE
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QIE23272
LinkDB
All DBs
Position
1438618..1443894
Genome browser
AA seq
1758 aa
AA seq
DB search
MPNVSKRAADADKLDPQEQLKKLREALLRDAAARESDGENDADDDAGSAVNRKKEAAARR
FAGASADASKAPHGGAAASAQAAQQLAKKNVQKRPGVSPSSPSSSSARRDQPGGSSTSPA
SSPQPARRNERGGSLASLSSLSTLLSDKADAAGSSATAGERHSDAAGANGRNAGNPSSGK
QATESRTARPSSTPHVRGPADVFVQQPAAAARQAEAKSIQRGPEARIAGWSDSHQPSGDA
GARAEKRGPVAKAGPAPEGTSNIPAISSSAEPARREAVASVERIAHPARQRERPSDGDTR
PGDGKQTASVGRSGEQTQDRKPSSTNSADRAGRNPQDVNALRDAGRTHPRESGNAGRLRD
ASVNRSDATVSQQSPIAAPSGTPAGKRPARKPERPATKTEQRPPRRSDEAGSTGSVSGAQ
ETRPAVRPQKGERNEADTDRQQQSAADPANRQRRESPRPRRVVEPNPIPPIRFPETLPVS
ARRDEIAAAIQANQVVIVSGETGSGKTTQLPKICLALGRGLGAGGTGLIGHTQPRRIAAS
ATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKLMTDGILLAETQTDPLLAAYDTIII
DEAHERSLNIDFLLGYLREILPRRPDLKVIVTSATIDADRFARHFGSDEKPAPVIEVSGR
LYPVEVRYRPVEEESPAIKAAQGTAQGAQQKDRPDRPRTQRENDRDLMEAIVDAVDELCR
EGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQERVFRTSNARRIVLA
TNVAETSLTVPGIRYVVDIGLARVKRYSYRNKVEQLQIEPISQSSANQRAGRCGRVADGV
CIRLYEEDDYNLRVRFTDPEILRSSLAAVILRMKSLHLTAIETFPFLEPPPGRAIADGYQ
LLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDHQSLREVLIIASALSVQDPRD
RPIEAQEQADLAHKKFADERSEFLQWTKIWTWFEDAIAHKKSNKQLTDACRANFLNHVRL
REWRDVHSQLLTVVREHGWRLNESEATFEQVHLALLTGLLGNVGLKADDEPYYLGARGIK
FYLWPGSALLKKAGRWVIAGELVETSRLYARCIAKIEPEWLEQVGAHLLRKSISEPHWEK
KAAQVAAFERATLHGLTVYARRRVSFGKQDPERARELFIRGALVDGEFETKLPFFAHNRK
LLADIEQLEHKSRRQDVLVDDELIFGFYDSLVPKGIYSGAAFERWYRDEEKKNGASSRLL
FLSRDDLMRHEAAGITTDLFPKRMTMAGIEMTLTYHFEPGSPRDGVTLTVPLFGLNQVDA
RRSEWLVRGMLKEKIQLLLKSLPQKLRRHLVPLPEFSAGVVERHSGKTFGAGGLLEALIA
DIREQTQVAMKSSDFKLETLPAHLFMNFKVIDEHGRQLAMGRNLSQLRTELGSQAQQHFQ
KLAAGATLDGSNDATAPITRAASASESSGSSSSTALYENLTTWDFGKLPELLEIRRRGQT
LFGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLREPIRYLERNLGGLREMSL
QYMALGTQEELANQIIETALDRACLQDPLPDNDVDFYARRDQGKSRLTLLAQEIARLAGQ
ILMEYATVLKKLTQAKSFGAPYADMVAQLNALIGKRFVIDTPYTQLSHFPRYLNAMALRI
EKLKADAVRDARLSAEIAPLLQNYQRAVAQRGGVADVRLSEYRWLLEELRVSLFAQELRT
PMPISVKRLYKVWESMQR
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgccgaatgtttccaaacgtgccgccgatgcggacaagcttgacccccaggagcagttg
aaaaagctgcgtgaagcgctgctgcgcgatgcagcggcgcgcgaaagcgatggcgaaaat
gacgccgatgacgacgcggggagtgccgtcaaccgcaagaaggaagccgctgcgcggcgg
tttgcgggggcctcggccgatgcgtcgaaagcgccgcacggcggggcggccgccagcgcg
caagccgctcagcagcttgccaaaaaaaatgttcagaaaaggccgggagtttcgccttct
tcaccgtcttcgtcatctgctcggcgcgatcaaccgggaggttcttcgaccagtcccgcg
tcttctccgcagcccgcgcgaagaaacgagcgtggtggcagtttggcctcgttgtcgtcg
ttatcgactttgttgtccgacaaggcggacgctgcgggttcgtcggctactgccggagaa
aggcatagcgatgccgcgggcgcgaacggtcggaacgcgggcaatccatcgtcgggcaag
caagccactgaaagtcgaacggcacgtccttcctcaacacctcacgttcgcggtcctgcc
gatgtttttgtacaacaaccggcggcggccgcgcgtcaggcagaggccaagagcattcaa
cgtgggccggaagcccgcattgccgggtggagtgattcacatcagccatcgggcgatgct
ggcgcgcgggccgaaaagcgcggaccggtagcgaaggccggccctgctccagaggggacg
tcgaatatccctgcgatcagttcaagcgccgaacctgcacgtcgtgaagccgttgcgagc
gtcgaacgtatcgcgcatcctgcccgtcaacgcgagcgaccgagtgatggcgatactcga
ccgggcgatggcaagcagactgcgagcgtcgggcgtagcggggaacagacgcaggataga
aaaccgtcgtcgaccaattccgccgatcgggccggacgcaatccgcaggatgtgaacgcc
ctacgagacgcgggaagaacgcatcctcgcgaaagcggcaacgcgggacgactgcgagac
gcatccgtaaatcggtccgacgcaaccgtttcacagcaatcaccgatcgcagcgccgtcc
ggaactccagccggaaaacgtccggcgcgaaaacctgaacgccctgcaacgaagacagag
cagcgtcccccccgtcgttccgacgaagcgggcagcactggttccgtttccggcgctcag
gagacccggccggcagtccggccgcagaagggcgaacgcaatgaggccgataccgatagg
caacagcaatcggccgctgacccggcgaaccggcagcggcgtgagtccccacgcccgcgt
cgcgtagtcgaacccaaccccattccgcctatccgtttccccgaaacgctcccggtgtct
gcccgacgcgacgaaatcgctgcggcgatccaggcgaatcaggtggtgatcgtcagcggc
gaaacgggctccggcaaaacgacgcagttgccgaaaatctgtctcgcgcttggtcgcggc
cttggcgcgggcggcacggggctgatcggccatactcaaccgcgccggatcgcggcatcg
gctacgggtcggcggattgcggaagaactcgggacgccgttcggcgaagtagtcggatac
aaggtccgcttcacagacaacctgtcgccgggtgcatcggtgaaactgatgaccgacggc
attttgctcgccgagacgcagaccgatccgctgctcgccgcgtacgacacgatcatcatc
gacgaagcgcatgagcgcagcctgaacatcgatttcctgctcggatacctgcgcgaaatc
ttgccgcgccggccggatttgaaggtgatcgtgacatcggcgactatcgatgccgaccgt
ttcgcgcgccatttcggcagcgatgaaaagccggcgccagtcatcgaagtgagtgggcgg
ctgtatcccgtggaagtgcggtatcggccggtcgaggaagagagtccggccatcaaggct
gctcagggcacagcacaaggcgcgcagcaaaaagatcgcccggatcgcccacgaacccag
cgcgaaaacgaccgcgatttgatggaagcgatcgtggacgccgtcgacgaactctgtcgc
gaaggccctggcgacgtcctcgtgttcctccccggcgagcgagaaattcgcgacgccgcc
gaggcgctgcgcaagcaccatccgccgcacaccgaaatcctgccattgttcgcgcgcttg
tccgccgccgagcaggagcgtgtgttccgcacatcgaacgcgcgccggatcgtgctggcg
acgaatgtcgcggaaacgtcgctgacggttccgggcattcgttatgtcgtcgatatcggg
cttgcacgcgtaaaacgctattcttatcgcaacaaagtcgagcagttgcagatcgagcca
atttcgcaaagctcggcgaatcagcgtgccggccgttgcgggcgcgtggcggacggcgtg
tgcattcgtctttatgaagaagacgattacaacctgcgcgtgcgtttcaccgatcccgag
attctccggtcgtcactggccgcggtgattttgcggatgaaatcgctgcacctgacggcg
atcgaaacattcccgttcctcgagccgccgccgggccgggcgatcgctgacggttatcaa
ttgctgaacgaacttggcgctgtcgatgacgacaacgctctcacgccactcgggcgcgaa
ctggcgcgtttgccgctggatccgcgcgtcggccggatgattcttgccgcacgcgatcat
cagtcgttgcgcgaggtgttgatcattgcgagcgcgttgtcggttcaggacccgcgcgat
cggccgatcgaggcgcaggagcaggccgatctggcgcacaagaaattcgccgatgaacgc
tcagagttcctgcaatggacaaaaatctggacgtggttcgaggacgcgattgcgcacaaa
aaatcgaacaagcagctcaccgatgcctgccgtgcgaactttttgaatcacgtgcggctg
cgtgaatggcgcgacgtgcattcgcaattgctgacagtcgtccgtgaacatggctggcgc
ctgaacgagtccgaagcgacgttcgagcaggttcatctcgctttgctgacgggtttgctt
ggcaacgtgggcctgaaagccgacgacgagccgtattaccttggcgcgcgcggcatcaag
ttttatctgtggccgggttcggcgctgctgaagaaagccgggcgttgggtcatagccggc
gaacttgtggagacgagccggttgtatgcgcggtgtatcgcgaaaatcgaacccgaatgg
cttgagcaggtcggcgcgcatttgttgcgcaagtcgatctcggagccgcattgggaaaag
aaggccgcgcaggtggcggccttcgaacgcgcgacgctgcacggcctgacggtctatgcg
cgacggcgcgtgagtttcggcaagcaggacccggagcgcgcgcgtgagttgttcattcgc
ggtgcgctggtcgatggtgaattcgaaacgaaactgccgttttttgcgcacaaccgcaag
ttgctcgcggatattgaacagttggagcacaagtcgcgtcgccaggatgtgctcgtcgat
gacgaattgatctttggtttctacgattcgctcgtgccgaagggcatctactccggcgcg
gcgttcgagcgctggtatcgggatgaggaaaaaaagaacggcgcgtcatcgcgcctgctt
ttcctctcgcgcgacgacctgatgcgccacgaagctgctggcatcacaaccgacctgttc
ccgaaacggatgacgatggccggtatcgaaatgacgctgacctatcacttcgaacccggt
tctccacgcgacggtgtgacgttgaccgtgccgctgttcggcctgaatcaagtcgacgcc
cgccgttcggaatggttggttcgcggcatgctgaaggaaaaaatacagctgttgctgaag
tcgctgccgcagaaattgcgacgccacctcgtgccattgcccgagttttcggcgggcgtc
gtcgagcggcacagcggcaagactttcggcgcgggtggtttgctcgaagcgttgatcgcg
gacattcgtgagcaaacgcaggtcgcgatgaagtcgtcggacttcaagctcgaaacgctg
ccagcgcatttgttcatgaacttcaaggtcatcgacgaacacggccggcaactcgcgatg
ggccgtaatctctcgcaattgcgaaccgagctgggcagccaggcgcagcagcatttccag
aagctggcggcgggggcgactttagacgggagtaatgatgcgacggcgccgattacgcga
gcggcttcggcgtccgagtcttccggatccagttcaagcaccgcgctctacgaaaacctc
accacgtgggatttcggcaaattgcccgagttgctggaaatccggcggagggggcagacg
ctatttggctatccggcgctcgtcgatcgggggacgcattgcgacgtcgaagtgttcgat
tcgccggaagaagctgcgcggattcatcgggcgggtttgcgtcgattgttcgcgttgcag
ttacgcgagccgattcgctatctcgaacgtaatctgggcgggttgcgcgagatgtcgttg
caatacatggcgctgggcacgcaggaggagcttgcgaaccagatcatcgaaacggcgttg
gaccgtgcgtgcctgcaagatccgcttccagataacgatgtggatttctacgcgcgccgt
gaccagggcaagagccggctgacacttctcgcgcaggaaatcgcgcggctggcggggcag
atcctgatggaatacgcgacggtgttgaagaaactgacgcaggccaaatcgttcggcgcg
ccgtatgcggatatggtcgcgcaactgaacgcattgatcggcaagcgctttgttatcgat
acgccttacacgcagttatctcatttcccacggtatctgaacgcgatggcgttgcggatt
gaaaagctgaaagccgatgctgtgagggacgcgcgattgtcggcggaaatagcgccgctg
ctgcaaaactatcagcgggcggtcgcgcaacgcggtggtgtggcggatgtgcgattaagt
gaatacaggtggctactggaagaactgcgggtgtcgctgtttgcgcaagagcttcgcacg
ccaatgcctatttcggtcaagcgcttgtataaggtgtgggagtcgatgcagcgttaa
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integrated database retrieval system
