Caballeronia sp. SBC2: SBC2_20990
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Entry
SBC2_20990 CDS
T06459
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
caba
Caballeronia sp. SBC2
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
caba03009
]
SBC2_20990 (rlmD)
Enzymes [BR:
caba01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SBC2_20990 (rlmD)
Ribosome biogenesis [BR:
caba03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SBC2_20990 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
Methyltransf_15
Methyltransf_23
TRM5-TYW2_MTfase
Methyltrans_SAM
MTS
RrnaAD
PCMT
TRAM
Methyltransf_11
Methyltransf_32
Methyltr_RsmB-F
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QIE24070
LinkDB
All DBs
Position
complement(2323881..2325293)
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AA seq
470 aa
AA seq
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MSHARKKSRSRWNAPVRIVPLDPSAAPLEIEIKSLDMDAQGVGRATTEDGSEGKVIFVEG
ALPGERVLYASFRKKAAFEQALLIKILRESVMRTQPKCPYFSKCGGCSMQHLDVRAQIAV
KQRVLEDNLQHIGKLHAETIYRPIHGPSWGYRYRARLAVRLIAGKGGALVGFHEKKSSFV
ADMETCDVLHPNVSALLMPLRLLVRDLSIRDRLPQIEVAVGAEVTALVLRILEPLTQEDE
ALLRTFADAHGVQFWLQPKGPETAYPFYPVDRELAYTLPEFGIRMPFKPTDFTQVNHQIN
RVLVSRALRLLAAQRTDRVLDLFCGIGNFTLPLARVAREVVGIEGSAGLTERALENARSN
GVHEHTSFACRNLFEITADDFRALGPFDKILIDPPREGALAVSKALGEIAQSGEGELPKR
IVYVSCNPATLARDAGVLVRDAGYRMKGAGVVNMFPHTSHVESIALFERD
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcacgctcgaaaaaaatctcgtagtcgctggaatgcgccggttcgaatcgttcct
ctggatccttcggccgcgccgctcgagatcgaaatcaaatcgctcgatatggatgctcaa
ggtgtcggccgcgcgacgaccgaggacggctcggaaggcaaggttatttttgtggaaggc
gcgctgccgggtgaacgcgtgttgtatgcgagctttcgcaagaaggccgctttcgagcag
gcgctgctcataaaaatccttcgtgaaagcgtcatgcggacgcagccgaaatgcccctat
ttcagtaaatgcggcggctgctccatgcagcacctcgacgtgcgcgcgcagatcgccgtg
aagcaacgcgtcctcgaggacaacctgcagcacatcggcaagctccatgcggaaacgatc
tatcggcctattcacgggccgtcgtggggataccggtatcgggcgcggttggctgtgcgg
ctgatcgcgggaaagggcggcgcgctggtgggattccacgagaaaaagagcagttttgtc
gccgatatggaaacttgcgacgtcctgcacccgaatgtgtctgcactgcttatgccgctg
cgcctgctcgtccgcgatttgtccattcgcgaccgcctgccgcagatcgaagtggccgtt
ggagccgaggtaaccgcgctggtgctgcggattctcgaaccgctgacgcaggaggatgaa
gcgctgctgcgtactttcgccgatgcccatggcgtccagttttggctgcaaccgaaaggg
ccggagacggcttatcccttttatccggtcgaccgggaactggcttacacgctgccggaa
ttcggcatccgcatgccgttcaaaccaaccgatttcacccaggtcaatcatcagatcaac
cgcgtgctcgtcagccgcgcgttgcggctgctggccgcgcagcgcacggatcgggtgctg
gacctgttttgcggtatcggtaatttcacgctgccgctcgctcgcgtagcgcgcgaagtg
gtgggaattgagggaagtgcgggcctgaccgaacgtgcgctggaaaatgcgaggtcgaat
ggcgtccatgagcatacgtcgttcgcatgccgaaacctcttcgagatcacagcagacgat
tttcgtgcgctcggtcccttcgacaagattctcattgatccgccgcgtgaaggtgcgctg
gcggtatcgaaggcgctgggagaaattgcgcagagcggcgagggcgagttgcccaagcga
attgtctacgtctcctgcaatccggcaacactcgcccgagacgcgggcgtgctcgtgcgc
gatgccggttaccgcatgaagggcgcgggtgtggtgaacatgtttccgcatacatcgcac
gtcgaatcgattgcgctgttcgagcgcgattga
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