Caballeronia sp. SBC2: SBC2_26060
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Entry
SBC2_26060 CDS
T06459
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBC2_26060 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caba03019
]
SBC2_26060 (rne)
03009 Ribosome biogenesis [BR:
caba03009
]
SBC2_26060 (rne)
Enzymes [BR:
caba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SBC2_26060 (rne)
Messenger RNA biogenesis [BR:
caba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SBC2_26060 (rne)
Ribosome biogenesis [BR:
caba03009
]
Prokaryotic type
rRNA processing factors
SBC2_26060 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QIE24559
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Position
2873154..2876564
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AA seq
1136 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMSQLDLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAVEAASQSGVAGKPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ASAFMDIVMPDNLSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARSTKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLIPNKHLET
PHYKLERLRHDDTRLDEPRASWKMAEEAAHELESETGYSKRTEEIKPKQEAMVKGITPTS
PAPSAPVKVAAAPVAATPVAAASTGTGGFIGWLKNLFGVQPEVKPAPAPVVAPTPARPAR
GERPERSGAGGDRNRNRRGGAASRDSAAATTGATPSAAGTAGGRQNPRREEREPKETREP
REARETREPREPREPRGGREGREPREAREGREPREVREPREPREPRENRGERAPERAEAA
DRGERRERGERPERGERRKPQPEAAVEALTQGETVVSELTENTASGQESQQNGNADALQA
DQASAAREGEERRRRRRGRRGGRRDREEDGVTLNQAADVAENEGNADSERAQAGVFDTDS
SNEADDSRDFAPVVAKPVETAPVVQAPAQEPAHAVMVEPVSVAAISVTELLEPVRVVQVA
PVEAAPVEARRAEAEGFVVSHAAQEVHAAQETSAAVAEAPATDIFEKPASRPIENPFGPT
PKVAEEKVESPFADTPKAAEPAPVVAPVVAHAAPEAQVAEPVNTAPVAATPASETVAPID
SPAPVVAEALAPDEAEPVKTFEPVETVAPVAAAPVAAATVAPVAPVAAVTLKEEVLKPML
DTAGLVWVNTDADKLRAAREAAAQAEAPKRVVRERKRLPPLDAAPMQQVETGKDAQ
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaacgcgacgcagcaagaagaattgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgacatcgaaactgccggccgcgaacagcgcaaaggcaat
atctacaagggagttattacccgcatcgagccctcgctcgaagcgtgttttgtgaactac
ggcgaagaccgccacggtttcctgccgttcaaggaagtcgcgcgccagtatttcaaggac
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgaaggccaggaactgatc
attcaggtcgaaaaggaagagcgcggcaacaagggcgcagccctgaccacgtttatctcg
ctcgccggacggtatctcgttttgatgccgaacaacccgcgcggcggtggtgtatcgcgc
cggattgaaggcgacgagcgccaggaattgcgcgaaacaatgtcgcagctcgatttgccg
gaaggcatgagcatcatcgcgcggacagcagggattggccgttcggccgaagaacttcag
tgggacctgaattacctgatgcagctgtggcgcgcggtggaagcggcgtcgcaaagcggc
gtggccggcaagccgatgctgatttatctggaatccagcttggtgatccgcgcaatccgc
gattatttccagccggatatcggcgaaattctgatcgataccaccgaaatccatgaccag
gccagcgccttcatggacatcgtgatgccggataacttgagcaaagttaagcgctatcac
gacgacgttcccctcttctcccgcttccagatcgaacaccagattgaaaccgcgtattcg
cgcacggtgccgttgccctcgggcggcgcgatcgtgatcgaccacacggaagcactggtg
gctatcgacgtgaactcggcccgctcgaccaagggcgcggacattgaggaaacagcgacc
cgcacgaaccttgaagccgccgacgaagtcgcgcgccagttgcgcctgcgcgatctgggc
ggcttgatcgtgatcgactttatcgacatggagtcggccaagagccagcgcgaagtcgag
caacgtctcaaagacgcgctcaagcacgaccgtgcgcgcgtacaaatgggcaagatttcg
cgcttcggtttgatggagctgtcgcgtcagcgcctgcgtccggcactctccgaaggcagc
cacgtgacgtgcccgcgttgtaacggcacgggccacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcaatgaaggaaaacaccgcggcaattcat
tgccaggtgccggtggaagtgaccgccttcctgctgaacgaaaagcgttcggaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgttgatcccgaacaagcatctcgaaacg
ccgcattacaagctggaacgcctgcgtcacgacgacacgcgtctcgacgaaccgcgtgcc
tcctggaagatggccgaggaagcggcgcacgaactggaatccgaaacgggttacagcaag
cgcaccgaagaaatcaagccgaagcaggaagcgatggtcaagggcatcacgccgacatcg
cctgcgcctagcgcgccggtgaaggtcgctgcggctcccgtggctgcgactcctgtggcg
gctgcttcaacaggaacgggcgggtttatcggctggctgaagaacctgttcggcgtccag
cccgaagtaaaaccggcgcctgcgccggtcgtcgcgcccacgccggcacgtccggcccgt
ggcgaacggccagagcgttcgggtgcaggtggtgaccgcaaccgcaatcgtcgtggtggt
gcggcttcgcgcgatagcgccgccgccactaccggcgctacgccaagcgcggcgggcacg
gcaggtggtcgtcaaaacccgcgccgcgaggaacgggaaccgaaggaaacgcgtgaaccg
cgcgaagcacgtgagacccgcgagccgcgcgaaccccgcgaaccgcgtggcggacgtgaa
ggccgtgagccgcgtgaggctcgtgaaggacgtgaaccgcgcgaagtgcgcgagcctcgg
gagccgcgcgaaccgcgtgagaaccgtggtgaacgcgcaccggaacgtgctgaagccgcc
gatcgcggtgaacgccgtgaacgtggggagcgcccggaacggggtgagcgccgcaagcca
cagccggaagccgccgtcgaagcgttgacgcagggtgaaacggtggtgtcggagttgacg
gaaaacaccgcttcgggccaggaatcgcagcagaacggcaacgctgacgcattgcaggct
gatcaggccagcgcagcgcgtgaaggcgaagagcgccgtcgccgtcgtcggggccgtcgt
ggtggacgccgtgatcgcgaggaagacggcgtgacgctcaatcaagccgccgacgttgca
gaaaacgaaggcaacgctgacagcgaacgcgctcaagccggggtgtttgacacggattcg
tcgaatgaagccgacgacagccgcgatttcgcacccgttgtggctaagccggttgagacg
gcgccggttgtgcaggctcccgcccaagaaccagcacacgcagtcatggtcgagccggtt
tcggtcgccgcgatcagcgtgacggagttgctggaaccggttcgtgtcgtgcaggttgcg
ccggttgaagccgcgcccgtggaagcgagacgtgccgaagccgaaggttttgtcgtgtcg
catgcagcgcaggaagtgcatgccgcacaggaaaccagcgcagcggttgccgaagcgccc
gcaaccgacatcttcgaaaagccagcgtcacggccaatcgaaaatccgttcggaccgacg
ccgaaggtagcggaagagaaggtcgaaagtccttttgccgataccccgaaggcagccgaa
cccgcgcctgtcgttgcgcccgtcgttgctcacgcagcgccggaagctcaagtcgctgag
ccggtgaacacggcgcctgtcgccgcgacgccggcatcggagacggttgcaccgatcgat
tcgcctgcgccggttgttgccgaggcgttggctccggacgaagccgagccggtgaagacg
tttgaaccggtggaaaccgtggcgcccgttgcggccgctcctgtagcggccgcaacggtt
gctccagttgccccggtcgccgctgtcaccctgaaggaagaagtgctcaagccgatgctg
gatacggcgggcctagtctgggtgaacaccgacgccgacaagctccgcgcagcccgcgaa
gctgcagcccaggcggaagcgccgaagcgtgtcgtgcgcgaacgcaagcgactgccgccg
ctggacgccgcgccaatgcagcaagtggaaacaggtaaagacgcacagtaa
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