Caballeronia sp. SBC2: SBC2_30410
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Entry
SBC2_30410 CDS
T06459
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
caba
Caballeronia sp. SBC2
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caba03016
]
SBC2_30410 (rnb)
Enzymes [BR:
caba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SBC2_30410 (rnb)
Transfer RNA biogenesis [BR:
caba03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SBC2_30410 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QIE24990
LinkDB
All DBs
Position
complement(3358822..3360906)
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AA seq
694 aa
AA seq
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MNVFFEESGSFKAGAVLSKQNDAFQVELPGGRRAKVRAKDVLIEFEKPNAADLMQQADAI
AQDIDLDFLWECAPDEEFPFAELGADYFGDKFGATERAALVLRMHGSPVYFRRKGRGQYQ
RAPQEQLQMALAGLEKKRQLALVQAGYEAELVAGKLPDALAGKAIGLLTKPDKNSIEYKA
LEAAAAARGISQARLMLEVGGIPSARALHEARFLSEFFPHGTGFAPVTVPPLSDDLPEAD
VQAFSIDDVTTTEIDDAFSVEHLADGRVRVGIHIAAPALGIARGDMIDAIARTRLSTVYM
PGDKITMLPDSVVEAFTLAEGGLRPALSLYIIVNRETQEIVATETRAERVFVKSNLRHNH
LDEHVTEESLAAGSGEYPHKDDIAVLWPLAQALFEKRQEARAGYGLRREVQRNNDFNFYV
EGEHITITPRRRGSPLDLIVAELAILANSSWGAFLNDHSVPGIYRSQRGFGAPGPKRTRM
QTTPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVRHGVTAALVAPFKPKDADLFAV
VQGFDDQYSAYADYQRRMEYFWCLRWLKQEDKKHVAASVVKDDLVRLDEIPLMLHVPGLG
VHARGTKVMLDVMSLDELTVEASCRLLHVIDAPAPASAQDAEAQQDEAEEELIETEDLSA
ESEAEAQAEAVPDAEASTDEPAGESTPDTAEPTL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgtttttttcgaggaatcgggtagtttcaaggccggcgccgttctgtccaagcag
aacgatgcgtttcaggtcgagttgccgggcgggcggcgagcgaaagtgcgcgccaaagac
gtattgatcgaattcgagaaaccgaacgcagccgatctgatgcaacaggccgatgccata
gcacaggacatcgatctcgacttcctgtgggagtgcgcgccggacgaagagtttccgttc
gcggaactgggcgcggattatttcggcgataaattcggcgctaccgagcgcgccgcgctc
gtgctgcgcatgcatggatcgccggtgtatttccgccgcaaggggcgcgggcaatatcag
cgcgcgccgcaggaacagttgcagatggcgctggccggactggaaaagaaacggcaactt
gccctcgtgcaggcgggttacgaagcggaactggtcgcgggaaaactacccgatgcgctc
gccggcaaggcgatcggcttgctgacgaagccggacaagaactctatcgaatataaggcg
ctcgaggcggctgctgccgctcgcggcatttcgcaagcgcggctgatgctggaagtgggt
ggcattccttcggcacgtgcgctgcacgaagcccgtttcctgtcggaatttttcccgcac
gggacgggcttcgcgccggttacggtgcccccgttgtccgacgatttgcctgaagcggac
gtgcaggcgttctccatcgatgacgtcaccaccactgaaattgacgacgcgttttccgtc
gagcatctcgccgatggccgcgtgcgcgttggtattcacatcgcggcgccggcactgggg
atcgcgcgcggcgacatgattgatgcgatcgctcgcacgcggttgtccaccgtgtacatg
cccggcgacaagatcacgatgctgccggacagcgttgtggaagcgttcacgctggctgaa
ggcggattgcggccggcgttgtcgctgtacatcattgtgaatcgggaaacgcaggaaatc
gtcgcgaccgaaacgcgcgccgagcgtgtgttcgtgaagagcaatcttcgacacaaccat
ctggacgaacatgtcaccgaggaatcgctcgcggcgggtagcggcgagtatccgcacaag
gatgacattgcggtgctgtggccgctcgcgcaagcgctgttcgaaaagcgtcaggaagcg
cgcgcgggttacggtctgcggcgcgaggtgcagcgcaataacgacttcaatttctacgtg
gaaggcgagcacatcacgatcacgccgcgtcgacgcgggtcgccgctcgatctgatcgtc
gccgagctggcgattttggcgaattcatcgtggggcgcgtttctcaacgatcacagcgtg
ccggggatctatcgctcgcagcgcggatttggcgcgccaggtccgaagcgcacgcgcatg
cagaccacgcccgcgccgcacgaagggctcggcgtcgcgcaatatgcgtggagcacgtcg
ccgttgcgtcgatacgtcgatttggtcaatcaatggcagttgctcgcgtgcgtgcggcat
ggcgtgacggctgcgctggttgcgccgttcaagccgaaagatgccgatctgtttgctgtg
gttcagggtttcgatgaccagtattccgcgtacgccgattatcagcggcgcatggagtat
ttctggtgtctgcgctggttgaagcaggaggataagaagcacgtggcggcgtcggtggtg
aaggacgatctcgtgcgcctggacgaaatcccgctgatgctgcatgtgcctggtcttggc
gtgcacgcgcgcgggacgaaggtgatgctggacgtcatgagtctcgatgaactcaccgtc
gaggcgtcgtgccgcttgctgcatgtcatcgatgcacctgctccggcgtcggcgcaagac
gccgaggcgcagcaggacgaggcggaagaagagctgattgaaacggaagatttgagtgcc
gagagcgaagctgaggcgcaggcggaagctgtgcccgatgcagaagcctctacggacgaa
ccggctggcgaaagcacgcccgacacggcggagcccacgctatga
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